Search Results
| Mutant Information |
|---|
| Mutant Name | FN2359 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2359 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12290902 | G-A | Homo | ||
| SBS | Chr2 | 1947985 | G-A | HET | ||
| SBS | Chr2 | 3915942 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g07560 |
| SBS | Chr4 | 15145849 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g26030 |
| SBS | Chr4 | 15209807 | T-A | Homo | ||
| SBS | Chr4 | 19754712 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g32750 |
| SBS | Chr4 | 30284192 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g51130 |
| SBS | Chr4 | 33682245 | C-T | HET | ||
| SBS | Chr5 | 5754434 | A-G | HET | ||
| SBS | Chr5 | 11388458 | G-A | HET | STOP_GAINED | LOC_Os05g19560 |
| SBS | Chr6 | 12247027 | G-A | HET | ||
| SBS | Chr6 | 12247028 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g21190 |
| SBS | Chr6 | 25280635 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g42090 |
| SBS | Chr7 | 2357141 | G-T | HET | ||
| SBS | Chr7 | 2357143 | C-T | HET | ||
| SBS | Chr8 | 411518 | T-C | Homo | ||
| SBS | Chr8 | 9512070 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g15660 |
| SBS | Chr9 | 3677049 | A-G | HET | ||
| SBS | Chr9 | 9184455 | C-G | HET | ||
| SBS | Chr11 | 9121740 | C-T | Homo | ||
| SBS | Chr11 | 15208302 | C-T | HET | ||
| SBS | Chr11 | 21671648 | C-T | HET | ||
| SBS | Chr12 | 5451795 | T-C | Homo | ||
| SBS | Chr12 | 6569831 | G-A | Homo | ||
| SBS | Chr12 | 19765499 | G-A | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 604103 | 604104 | 1 | |
| Deletion | Chr2 | 7376209 | 7376214 | 5 | |
| Deletion | Chr12 | 11981081 | 11981222 | 141 | |
| Deletion | Chr8 | 15890222 | 15890223 | 1 | |
| Deletion | Chr12 | 19249179 | 19249183 | 4 | |
| Deletion | Chr1 | 24157392 | 24157408 | 16 | LOC_Os01g42490 |
| Deletion | Chr1 | 39422990 | 39423001 | 11 | |
| Deletion | Chr1 | 41216016 | 41216021 | 5 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 22054665 | 22054666 | 2 | |
| Insertion | Chr7 | 16990876 | 16990887 | 12 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 25040328 | 25084803 | |
| Inversion | Chr3 | 31605051 | 31605282 | LOC_Os03g55540 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 3802956 | Chr2 | 34492267 | |
| Translocation | Chr5 | 6652041 | Chr3 | 566026 | |
| Translocation | Chr5 | 6652331 | Chr4 | 1448385 | 2 |
| Translocation | Chr6 | 10487845 | Chr3 | 460106 | |
| Translocation | Chr3 | 34340303 | Chr2 | 397598 | 2 |
| Translocation | Chr4 | 35194479 | Chr3 | 23669887 |