Search Results
| Mutant Information |
|---|
| Mutant Name | FN2360 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2360 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11847343 | G-T | HET | ||
| SBS | Chr1 | 17727682 | C-T | HET | ||
| SBS | Chr1 | 21392225 | A-G | HET | ||
| SBS | Chr1 | 28448195 | G-T | Homo | ||
| SBS | Chr1 | 31582440 | A-G | HET | ||
| SBS | Chr2 | 219397 | C-T | HET | ||
| SBS | Chr2 | 7788977 | G-A | HET | ||
| SBS | Chr2 | 27160934 | A-G | HET | ||
| SBS | Chr3 | 1008107 | C-A | HET | ||
| SBS | Chr3 | 9131592 | C-T | Homo | ||
| SBS | Chr3 | 18280488 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g31950 |
| SBS | Chr3 | 19952130 | G-A | HET | ||
| SBS | Chr3 | 31208079 | C-A | HET | ||
| SBS | Chr3 | 35747177 | C-T | HET | ||
| SBS | Chr4 | 23398861 | G-A | Homo | ||
| SBS | Chr5 | 2810348 | T-A | Homo | ||
| SBS | Chr5 | 5059164 | C-G | Homo | ||
| SBS | Chr6 | 1944382 | C-G | Homo | ||
| SBS | Chr6 | 2518011 | T-A | Homo | ||
| SBS | Chr6 | 15393210 | C-G | HET | ||
| SBS | Chr6 | 24180715 | C-T | Homo | ||
| SBS | Chr7 | 9694194 | C-T | HET | ||
| SBS | Chr7 | 15859630 | G-A | HET | ||
| SBS | Chr7 | 22710315 | G-A | HET | ||
| SBS | Chr7 | 24107389 | G-T | HET | ||
| SBS | Chr7 | 29556299 | G-A | HET | ||
| SBS | Chr8 | 7516616 | T-C | HET | ||
| SBS | Chr8 | 16917723 | G-T | HET | ||
| SBS | Chr8 | 21687175 | C-A | Homo | ||
| SBS | Chr9 | 5597603 | T-A | Homo | ||
| SBS | Chr9 | 22594118 | G-A | Homo | ||
| SBS | Chr10 | 1895170 | G-A | HET | ||
| SBS | Chr10 | 6382373 | C-T | HET | ||
| SBS | Chr10 | 20491339 | G-A | HET | ||
| SBS | Chr11 | 8825690 | G-A | HET | ||
| SBS | Chr11 | 13266692 | G-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 4605565 | 4605567 | 2 | |
| Deletion | Chr1 | 5135327 | 5135328 | 1 | |
| Deletion | Chr5 | 5928497 | 5928504 | 7 | LOC_Os05g10754 |
| Deletion | Chr9 | 8544987 | 8544995 | 8 | |
| Deletion | Chr2 | 11752630 | 11752637 | 7 | |
| Deletion | Chr9 | 14313214 | 14313215 | 1 | |
| Deletion | Chr2 | 14979786 | 14979789 | 3 | |
| Deletion | Chr11 | 21613987 | 21613990 | 3 | |
| Deletion | Chr11 | 23617631 | 23617637 | 6 | LOC_Os11g39650 |
| Deletion | Chr11 | 26030144 | 26030149 | 5 | LOC_Os11g43140 |
| Deletion | Chr4 | 27672396 | 27672397 | 1 | |
| Deletion | Chr1 | 28686818 | 28686819 | 1 | |
| Deletion | Chr5 | 29466309 | 29466324 | 15 | |
| Deletion | Chr2 | 33416862 | 33416864 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 1058037 | 1058037 | 1 | |
| Insertion | Chr8 | 28089917 | 28089917 | 1 | LOC_Os08g44700 |
Inversions: 8
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 10566983 | 10931950 | |
| Inversion | Chr10 | 10566999 | 10931959 | |
| Inversion | Chr10 | 11881196 | 12688910 | LOC_Os10g22869 |
| Inversion | Chr10 | 12690938 | 13012192 | 2 |
| Inversion | Chr7 | 23823761 | 23940695 | LOC_Os07g39750 |
| Inversion | Chr7 | 23908397 | 23940695 | LOC_Os07g39870 |
| Inversion | Chr1 | 30051764 | 30148612 | |
| Inversion | Chr1 | 30051870 | 30148615 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1243 | Chr2 | 162 | |
| Translocation | Chr8 | 2861073 | Chr1 | 17634409 | 2 |
| Translocation | Chr8 | 8200648 | Chr1 | 8425008 | 2 |
| Translocation | Chr6 | 9979238 | Chr4 | 1179008 | LOC_Os06g17230 |
| Translocation | Chr4 | 10337196 | Chr1 | 14847555 | |
| Translocation | Chr7 | 15420079 | Chr2 | 33188672 |