Search Nipponbare
Mutant Information |
---|
Mutant Name | FN2361 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2361 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
---|
Single base substitutions: 40
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 22171391 | C-T | HET | ||
SBS | Chr1 | 30460772 | C-T | Homo | ||
SBS | Chr10 | 10330002 | A-G | HET | ||
SBS | Chr10 | 753079 | T-A | HET | ||
SBS | Chr11 | 11357205 | T-C | Homo | ||
SBS | Chr11 | 9065086 | A-T | Homo | ||
SBS | Chr12 | 13293764 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g23510 |
SBS | Chr12 | 13293767 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g23510 |
SBS | Chr12 | 13293768 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g23510 |
SBS | Chr12 | 2656819 | T-C | HET | ||
SBS | Chr12 | 8853184 | T-C | HET | ||
SBS | Chr2 | 29811018 | A-G | Homo | ||
SBS | Chr2 | 6290666 | C-T | HET | ||
SBS | Chr3 | 1350891 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g03190 |
SBS | Chr3 | 2084060 | A-T | HET | ||
SBS | Chr3 | 21207270 | C-T | Homo | ||
SBS | Chr3 | 22196267 | C-A | Homo | ||
SBS | Chr3 | 24647985 | C-G | Homo | ||
SBS | Chr3 | 24647991 | C-T | Homo | ||
SBS | Chr3 | 5635119 | G-A | HET | ||
SBS | Chr4 | 11128261 | T-C | HET | ||
SBS | Chr4 | 16431685 | G-A | HET | ||
SBS | Chr4 | 16805408 | C-T | HET | ||
SBS | Chr5 | 24059907 | G-A | Homo | ||
SBS | Chr5 | 24059908 | T-A | Homo | ||
SBS | Chr5 | 24059909 | C-A | Homo | ||
SBS | Chr5 | 5580840 | C-T | HET | ||
SBS | Chr5 | 5799383 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g10640 |
SBS | Chr6 | 1264818 | G-C | HET | ||
SBS | Chr6 | 23362436 | A-T | Homo | ||
SBS | Chr6 | 29647031 | A-T | HET | ||
SBS | Chr7 | 13397229 | C-G | HET | ||
SBS | Chr7 | 15992406 | A-G | HET | ||
SBS | Chr7 | 16398597 | C-T | HET | ||
SBS | Chr7 | 18740733 | G-A | HET | ||
SBS | Chr7 | 24261928 | C-T | HET | ||
SBS | Chr8 | 13339618 | G-A | HET | ||
SBS | Chr8 | 15356585 | G-A | HET | ||
SBS | Chr8 | 15356586 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g25280 |
SBS | Chr9 | 13106451 | T-C | HET |
Deletions: 17
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 1337001 | 1351000 | 13999 | 3 |
Deletion | Chr3 | 2129747 | 2129753 | 6 | |
Deletion | Chr10 | 5147001 | 5232000 | 84999 | 13 |
Deletion | Chr3 | 5479001 | 5516000 | 36999 | 7 |
Deletion | Chr7 | 8388856 | 8388858 | 2 | |
Deletion | Chr9 | 13054463 | 13054475 | 12 | |
Deletion | Chr1 | 13873512 | 13873513 | 1 | LOC_Os01g24630 |
Deletion | Chr6 | 14733054 | 14733058 | 4 | |
Deletion | Chr12 | 15717379 | 15717388 | 9 | |
Deletion | Chr12 | 16164671 | 16164674 | 3 | |
Deletion | Chr7 | 19266675 | 19266687 | 12 | |
Deletion | Chr11 | 25961486 | 25961497 | 11 | |
Deletion | Chr11 | 26927097 | 26927099 | 2 | LOC_Os11g44530 |
Deletion | Chr7 | 27300793 | 27300794 | 1 | |
Deletion | Chr11 | 28821972 | 28821978 | 6 | LOC_Os11g47800 |
Deletion | Chr3 | 29840929 | 29840932 | 3 | |
Deletion | Chr1 | 30853654 | 30853665 | 11 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 22621177 | 22621229 | 53 | |
Insertion | Chr9 | 22053007 | 22053008 | 2 |
No Inversion
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 2973758 | Chr4 | 24732587 | 2 |
Translocation | Chr6 | 10838091 | Chr5 | 23479942 | |
Translocation | Chr4 | 29202060 | Chr2 | 30232055 | 2 |
Translocation | Chr6 | 31183767 | Chr5 | 23479793 | LOC_Os06g51480 |