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Mutant Information

Mutant NameFN2361 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2361 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 40
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr122171391C-THET
SBSChr130460772C-THomo
SBSChr1010330002A-GHET
SBSChr10753079T-AHET
SBSChr1111357205T-CHomo
SBSChr119065086A-THomo
SBSChr1213293764G-AHETNON_SYNONYMOUS_CODINGLOC_Os12g23510
SBSChr1213293767G-AHETNON_SYNONYMOUS_CODINGLOC_Os12g23510
SBSChr1213293768C-AHETNON_SYNONYMOUS_CODINGLOC_Os12g23510
SBSChr122656819T-CHET
SBSChr128853184T-CHET
SBSChr229811018A-GHomo
SBSChr26290666C-THET
SBSChr31350891A-THomoNON_SYNONYMOUS_CODINGLOC_Os03g03190
SBSChr32084060A-THET
SBSChr321207270C-THomo
SBSChr322196267C-AHomo
SBSChr324647985C-GHomo
SBSChr324647991C-THomo
SBSChr35635119G-AHET
SBSChr411128261T-CHET
SBSChr416431685G-AHET
SBSChr416805408C-THET
SBSChr524059907G-AHomo
SBSChr524059908T-AHomo
SBSChr524059909C-AHomo
SBSChr55580840C-THET
SBSChr55799383A-CHETNON_SYNONYMOUS_CODINGLOC_Os05g10640
SBSChr61264818G-CHET
SBSChr623362436A-THomo
SBSChr629647031A-THET
SBSChr713397229C-GHET
SBSChr715992406A-GHET
SBSChr716398597C-THET
SBSChr718740733G-AHET
SBSChr724261928C-THET
SBSChr813339618G-AHET
SBSChr815356585G-AHET
SBSChr815356586T-AHETNON_SYNONYMOUS_CODINGLOC_Os08g25280
SBSChr913106451T-CHET

Deletions: 17
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr313370011351000139993
DeletionChr3212974721297536
DeletionChr10514700152320008499913
DeletionChr354790015516000369997
DeletionChr7838885683888582
DeletionChr9130544631305447512
DeletionChr113873512138735131LOC_Os01g24630
DeletionChr614733054147330584
DeletionChr1215717379157173889
DeletionChr1216164671161646743
DeletionChr7192666751926668712
DeletionChr11259614862596149711
DeletionChr1126927097269270992LOC_Os11g44530
DeletionChr727300793273007941
DeletionChr1128821972288219786LOC_Os11g47800
DeletionChr329840929298409323
DeletionChr1308536543085366511

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr4226211772262122953
InsertionChr922053007220530082

No Inversion

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr92973758Chr4247325872
TranslocationChr610838091Chr523479942
TranslocationChr429202060Chr2302320552
TranslocationChr631183767Chr523479793LOC_Os06g51480