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| Mutant Information |
|---|
| Mutant Name | FN2362 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2362 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25245828 | G-C | HET | ||
| SBS | Chr1 | 28444933 | G-C | HET | ||
| SBS | Chr1 | 333355 | G-A | HET | ||
| SBS | Chr1 | 3802825 | A-T | Homo | ||
| SBS | Chr11 | 15069418 | G-A | Homo | ||
| SBS | Chr11 | 23564110 | G-A | HET | ||
| SBS | Chr11 | 27687913 | A-G | HET | ||
| SBS | Chr12 | 13371106 | G-T | HET | ||
| SBS | Chr12 | 7131410 | C-T | HET | ||
| SBS | Chr12 | 7131413 | G-T | HET | ||
| SBS | Chr2 | 19517941 | C-T | Homo | ||
| SBS | Chr2 | 21329646 | C-T | Homo | ||
| SBS | Chr2 | 26619522 | A-C | HET | ||
| SBS | Chr2 | 30667147 | T-A | HET | ||
| SBS | Chr2 | 33752750 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g55110 |
| SBS | Chr2 | 9575885 | A-G | Homo | ||
| SBS | Chr3 | 26174925 | G-A | HET | ||
| SBS | Chr3 | 5157534 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g10170 |
| SBS | Chr3 | 9227279 | A-G | HET | ||
| SBS | Chr4 | 18745255 | T-C | HET | ||
| SBS | Chr4 | 18745257 | G-A | HET | ||
| SBS | Chr4 | 5910002 | A-T | HET | ||
| SBS | Chr4 | 8712135 | G-C | HET | ||
| SBS | Chr5 | 11087658 | C-G | HET | ||
| SBS | Chr5 | 21875155 | A-T | HET | ||
| SBS | Chr5 | 27504346 | A-T | HET | ||
| SBS | Chr5 | 3961927 | G-A | HET | ||
| SBS | Chr5 | 6528987 | G-A | HET | ||
| SBS | Chr5 | 8310536 | C-T | HET | ||
| SBS | Chr8 | 102954 | C-T | HET | ||
| SBS | Chr8 | 18644473 | T-C | HET | ||
| SBS | Chr8 | 22442730 | G-A | HET | ||
| SBS | Chr9 | 13590617 | G-A | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 2010498 | 2010502 | 4 | |
| Deletion | Chr11 | 7117443 | 7117444 | 1 | LOC_Os11g12640 |
| Deletion | Chr6 | 7405773 | 7405777 | 4 | |
| Deletion | Chr7 | 17111742 | 17111743 | 1 | |
| Deletion | Chr5 | 20845741 | 20845742 | 1 | |
| Deletion | Chr7 | 25819312 | 25819314 | 2 | |
| Deletion | Chr6 | 26563923 | 26563929 | 6 | LOC_Os06g44040 |
| Deletion | Chr4 | 27963533 | 27963546 | 13 | |
| Deletion | Chr3 | 28030801 | 28030808 | 7 | |
| Deletion | Chr11 | 28462174 | 28462180 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 15270196 | 15270197 | 2 | |
| Insertion | Chr3 | 18407679 | 18407681 | 3 | |
| Insertion | Chr4 | 16920537 | 16920537 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 21772205 | 22626554 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4126991 | Chr1 | 3220302 | |
| Translocation | Chr7 | 9604616 | Chr3 | 25732270 | |
| Translocation | Chr12 | 11274362 | Chr7 | 8261482 | LOC_Os12g19381 |
| Translocation | Chr11 | 26207284 | Chr2 | 30805328 |