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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4407796	T-C	HET
SBS	Chr1	16600418	A-C	HET
SBS	Chr1	17587775	T-C	HET
SBS	Chr1	22511530	G-A	HET
SBS	Chr1	22608307	C-T	HET
SBS	Chr1	25149127	T-G	HET
SBS	Chr1	31537939	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54830
SBS	Chr2	1412619	G-T	HET
SBS	Chr2	4725433	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g09200
SBS	Chr2	26685008	C-T	HET	STOP_GAINED	LOC_Os02g44124
SBS	Chr2	31891522	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52100
SBS	Chr3	12334557	G-T	Homo
SBS	Chr3	13853502	C-G	Homo
SBS	Chr3	25496815	T-C	HET
SBS	Chr3	32942294	C-A	Homo
SBS	Chr4	30671778	C-T	Homo
SBS	Chr5	1902100	T-C	Homo
SBS	Chr5	12123423	C-T	Homo
SBS	Chr5	25080659	G-T	Homo
SBS	Chr5	25809143	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44350
SBS	Chr6	12670973	G-C	HET
SBS	Chr7	2909742	G-A	HET
SBS	Chr7	4849103	G-A	HET
SBS	Chr7	17456429	T-C	HET
SBS	Chr8	236627	C-G	HET
SBS	Chr8	7516327	A-C	HET
SBS	Chr8	22557637	G-A	HET
SBS	Chr9	1287743	C-G	HET
SBS	Chr9	6792048	T-C	HET
SBS	Chr9	8976474	A-T	HET
SBS	Chr9	8979374	G-A	HET
SBS	Chr9	22609225	T-C	HET
SBS	Chr10	17237657	C-T	HET
SBS	Chr10	18694206	C-A	Homo
SBS	Chr10	21829515	C-G	HET
SBS	Chr11	20368608	G-T	HET
SBS	Chr11	20918818	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35680
SBS	Chr11	22939947	A-T	Homo
SBS	Chr11	25332182	C-T	HET
SBS	Chr12	1231167	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03220
SBS	Chr12	2095613	C-T	Homo
SBS	Chr12	18290462	T-C	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	33576	33581	5
Deletion	Chr10	299876	299880	4
Deletion	Chr6	1879019	1879028	9	LOC_Os06g04390
Deletion	Chr10	5027001	5094000	66999	15
Deletion	Chr10	5106001	5113000	6999	2
Deletion	Chr10	5135001	5264000	128999	19
Deletion	Chr10	5266001	5397000	130999	21
Deletion	Chr10	5408001	5511000	102999	10
Deletion	Chr10	5514001	5583000	68999	7
Deletion	Chr5	6216565	6216576	11
Deletion	Chr12	8680669	8680683	14
Deletion	Chr7	13563119	13563136	17
Deletion	Chr9	18472131	18472133	2
Deletion	Chr10	21941471	21941473	2
Deletion	Chr5	24085280	24085288	8
Deletion	Chr3	24250608	24250615	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	23954570	23954572	3
Insertion	Chr3	27861179	27861180	2
Insertion	Chr3	32502552	32502553	2
Insertion	Chr7	6716735	6716736	2
Insertion	Chr9	19368572	19368573	2
Insertion	Chr2	9264158	9264158	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4932850	5562880	LOC_Os04g09284
Inversion	Chr9	11403971	11512962	2
Inversion	Chr9	11403973	11512970	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3982163	Chr3	2625500	2
Translocation	Chr7	6525565	Chr4	4932856	2
Translocation	Chr8	7289751	Chr2	604556	2
Translocation	Chr10	13193942	Chr1	18739440	2
Translocation	Chr11	15565953	Chr7	2896015	2
Translocation	Chr4	19396596	Chr1	20619202

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