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| Mutant Information |
|---|
| Mutant Name | FN2365 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2365 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 35826889 | A-G | HET | ||
| SBS | Chr1 | 38464174 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g66210 |
| SBS | Chr10 | 12661977 | C-G | HET | ||
| SBS | Chr10 | 16143024 | T-C | Homo | ||
| SBS | Chr10 | 16143025 | C-T | Homo | ||
| SBS | Chr10 | 16143029 | C-T | Homo | ||
| SBS | Chr10 | 18010662 | G-A | Homo | ||
| SBS | Chr11 | 21261696 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g36160 |
| SBS | Chr11 | 21265284 | A-T | HET | ||
| SBS | Chr11 | 23033143 | C-T | HET | ||
| SBS | Chr11 | 9645695 | A-C | HET | ||
| SBS | Chr12 | 13943012 | A-C | HET | ||
| SBS | Chr12 | 20908486 | T-A | HET | ||
| SBS | Chr12 | 22410821 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g36590 |
| SBS | Chr12 | 25323708 | T-G | HET | ||
| SBS | Chr2 | 20537786 | G-A | HET | ||
| SBS | Chr2 | 20895932 | T-C | Homo | ||
| SBS | Chr3 | 31907183 | C-T | Homo | ||
| SBS | Chr3 | 31907194 | T-A | Homo | ||
| SBS | Chr3 | 31907195 | G-T | Homo | ||
| SBS | Chr3 | 4607145 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g08900 |
| SBS | Chr4 | 13129166 | T-A | Homo | ||
| SBS | Chr6 | 1781356 | A-G | HET | ||
| SBS | Chr7 | 6526218 | T-A | HET | ||
| SBS | Chr8 | 26259094 | G-T | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 2903001 | 2907000 | 3999 | LOC_Os11g06100 |
| Deletion | Chr10 | 6821143 | 6821144 | 1 | |
| Deletion | Chr8 | 7861161 | 7861163 | 2 | LOC_Os08g13219 |
| Deletion | Chr5 | 9631939 | 9631958 | 19 | |
| Deletion | Chr1 | 9794554 | 9794572 | 18 | |
| Deletion | Chr5 | 10655570 | 10655571 | 1 | |
| Deletion | Chr1 | 11166664 | 11166672 | 8 | |
| Deletion | Chr5 | 12131073 | 12131074 | 1 | |
| Deletion | Chr7 | 14428494 | 14428496 | 2 | |
| Deletion | Chr3 | 19659345 | 19659347 | 2 | LOC_Os03g35454 |
| Deletion | Chr5 | 25231693 | 25231694 | 1 | LOC_Os05g43390 |
| Deletion | Chr3 | 28020770 | 28020771 | 1 | |
| Deletion | Chr6 | 28360067 | 28360081 | 14 | |
| Deletion | Chr3 | 31908331 | 31908334 | 3 | |
| Deletion | Chr1 | 39524588 | 39524589 | 1 | LOC_Os01g68000 |
| Deletion | Chr1 | 40831533 | 40831534 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 29199100 | 29199101 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 2159546 | 2919820 | |
| Inversion | Chr10 | 2566926 | 2919831 | |
| Inversion | Chr11 | 8758809 | 8938516 | LOC_Os11g15450 |
| Inversion | Chr1 | 23805983 | 23867705 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 13371574 | Chr3 | 26895072 | 2 |
| Translocation | Chr9 | 19929083 | Chr4 | 26648533 | 2 |
| Translocation | Chr9 | 21400560 | Chr2 | 18636872 | LOC_Os09g37110 |