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| Mutant Information |
|---|
| Mutant Name | FN2366 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2366 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21738075 | C-A | Homo | ||
| SBS | Chr1 | 27608620 | A-T | Homo | ||
| SBS | Chr10 | 15123715 | C-T | HET | ||
| SBS | Chr10 | 17045782 | C-A | Homo | ||
| SBS | Chr10 | 17880457 | T-C | HET | ||
| SBS | Chr10 | 18074983 | T-A | HET | ||
| SBS | Chr10 | 18079374 | G-T | HET | ||
| SBS | Chr10 | 19149976 | T-C | HET | ||
| SBS | Chr10 | 19248525 | G-A | HET | ||
| SBS | Chr11 | 15897045 | C-T | Homo | ||
| SBS | Chr11 | 19068321 | A-G | Homo | ||
| SBS | Chr11 | 26722393 | T-C | Homo | ||
| SBS | Chr12 | 10534440 | C-T | HET | ||
| SBS | Chr12 | 19460644 | C-T | Homo | ||
| SBS | Chr2 | 30776706 | G-T | Homo | ||
| SBS | Chr2 | 31036324 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g50805 |
| SBS | Chr2 | 6360333 | G-T | HET | ||
| SBS | Chr3 | 22751756 | T-G | HET | ||
| SBS | Chr4 | 10217317 | G-A | Homo | STOP_GAINED | LOC_Os04g18480 |
| SBS | Chr4 | 14315478 | C-T | Homo | ||
| SBS | Chr4 | 14315479 | C-T | Homo | ||
| SBS | Chr4 | 17422665 | A-G | Homo | ||
| SBS | Chr4 | 22478012 | G-T | HET | ||
| SBS | Chr4 | 27445257 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g46310 |
| SBS | Chr4 | 27445258 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g46310 |
| SBS | Chr4 | 5311752 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g09880 |
| SBS | Chr4 | 8659471 | G-A | HET | ||
| SBS | Chr5 | 21931707 | A-T | HET | ||
| SBS | Chr5 | 22262865 | G-T | HET | ||
| SBS | Chr6 | 10146362 | C-T | Homo | ||
| SBS | Chr6 | 28398682 | T-A | HET | ||
| SBS | Chr7 | 20781538 | G-A | HET | ||
| SBS | Chr8 | 25505979 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g40290 |
| SBS | Chr9 | 15920249 | A-T | Homo | ||
| SBS | Chr9 | 6345609 | T-C | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1692685 | 1692688 | 3 | |
| Deletion | Chr7 | 2107281 | 2107287 | 6 | |
| Deletion | Chr10 | 3364297 | 3364304 | 7 | |
| Deletion | Chr9 | 6360024 | 6360034 | 10 | |
| Deletion | Chr10 | 6970599 | 6970603 | 4 | LOC_Os10g12530 |
| Deletion | Chr4 | 10529729 | 10529730 | 1 | |
| Deletion | Chr2 | 10953825 | 10953840 | 15 | |
| Deletion | Chr1 | 12531092 | 12531093 | 1 | |
| Deletion | Chr6 | 13811871 | 13811877 | 6 | |
| Deletion | Chr1 | 20820864 | 20820865 | 1 | |
| Deletion | Chr9 | 21898255 | 21898258 | 3 | |
| Deletion | Chr1 | 28463529 | 28463530 | 1 | |
| Deletion | Chr3 | 33743493 | 33743495 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 12842467 | 12842469 | 3 | |
| Insertion | Chr3 | 34401024 | 34401025 | 2 | |
| Insertion | Chr5 | 20395648 | 20395649 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 10534913 | 10759634 | 2 |
| Inversion | Chr4 | 27082327 | 27288815 | 2 |
| Inversion | Chr4 | 27288825 | 27740222 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 27408691 | Chr4 | 28035496 | |
| Translocation | Chr11 | 28240877 | Chr7 | 25183003 | LOC_Os11g46980 |