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Mutant Information

Mutant NameFN2374 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2374 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 45
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr116177353A-GHomo
SBSChr122075679G-THomo
SBSChr1015998694T-CHET
SBSChr1017631068C-THET
SBSChr1017824681C-THETNON_SYNONYMOUS_CODINGLOC_Os10g33740
SBSChr1018651208T-AHET
SBSChr10232690T-CHomo
SBSChr103053471G-CHET
SBSChr108622663C-THomo
SBSChr1119172323A-GHET
SBSChr121167355C-THET
SBSChr211074145C-THET
SBSChr220145611C-THET
SBSChr226164165T-CHET
SBSChr24831052T-AHomo
SBSChr26221851T-AHET
SBSChr27663803G-AHET
SBSChr316385394A-THET
SBSChr316385396G-THET
SBSChr316425099A-THET
SBSChr321654375G-THET
SBSChr32502115G-THomo
SBSChr412525823G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g22110
SBSChr419461748C-AHET
SBSChr428551312C-THET
SBSChr433457073G-THET
SBSChr514959790A-THET
SBSChr524724013G-CHomo
SBSChr54582177C-AHomoNON_SYNONYMOUS_CODINGLOC_Os05g08400
SBSChr56204750C-THET
SBSChr712978961C-THET
SBSChr724787724C-AHET
SBSChr729028455A-THET
SBSChr74933199G-THET
SBSChr7643427C-AHET
SBSChr79300138C-THomo
SBSChr810327758G-AHET
SBSChr816073786C-GHomo
SBSChr818398595G-AHETNON_SYNONYMOUS_CODINGLOC_Os08g29950
SBSChr821828224T-AHET
SBSChr82275999A-THET
SBSChr826813939A-THomo
SBSChr918252010G-AHET
SBSChr918266196G-AHET
SBSChr98330241A-THomoNON_SYNONYMOUS_CODINGLOC_Os09g14070

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr101778731177874110
DeletionChr104802499480251617
DeletionChr10564357756435869
DeletionChr10811134181113421
DeletionChr10971315097131533
DeletionChr317790813177908141
DeletionChr5200563102005632010
DeletionChr5207680012077900010999LOC_Os05g34970
DeletionChr524523551245235587
DeletionChr326061955260619561LOC_Os03g46080

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr611823316118233161
InsertionChr922451814224518152
InsertionChr9805787280578721LOC_Os09g13750image

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr454857426344957LOC_Os04g10160
InversionChr454857486344958LOC_Os04g10160

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr11728639Chr2132255542
TranslocationChr45672338Chr211399302LOC_Os04g10434
TranslocationChr129417701Chr317629552
TranslocationChr1216335281Chr739327642
TranslocationChr1017288480Chr919546310
TranslocationChr520368993Chr139261880