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Mutant Information |
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Mutant Name | FN2374 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2374 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 45
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 16177353 | A-G | Homo | ||
SBS | Chr1 | 22075679 | G-T | Homo | ||
SBS | Chr10 | 15998694 | T-C | HET | ||
SBS | Chr10 | 17631068 | C-T | HET | ||
SBS | Chr10 | 17824681 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g33740 |
SBS | Chr10 | 18651208 | T-A | HET | ||
SBS | Chr10 | 232690 | T-C | Homo | ||
SBS | Chr10 | 3053471 | G-C | HET | ||
SBS | Chr10 | 8622663 | C-T | Homo | ||
SBS | Chr11 | 19172323 | A-G | HET | ||
SBS | Chr12 | 1167355 | C-T | HET | ||
SBS | Chr2 | 11074145 | C-T | HET | ||
SBS | Chr2 | 20145611 | C-T | HET | ||
SBS | Chr2 | 26164165 | T-C | HET | ||
SBS | Chr2 | 4831052 | T-A | Homo | ||
SBS | Chr2 | 6221851 | T-A | HET | ||
SBS | Chr2 | 7663803 | G-A | HET | ||
SBS | Chr3 | 16385394 | A-T | HET | ||
SBS | Chr3 | 16385396 | G-T | HET | ||
SBS | Chr3 | 16425099 | A-T | HET | ||
SBS | Chr3 | 21654375 | G-T | HET | ||
SBS | Chr3 | 2502115 | G-T | Homo | ||
SBS | Chr4 | 12525823 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22110 |
SBS | Chr4 | 19461748 | C-A | HET | ||
SBS | Chr4 | 28551312 | C-T | HET | ||
SBS | Chr4 | 33457073 | G-T | HET | ||
SBS | Chr5 | 14959790 | A-T | HET | ||
SBS | Chr5 | 24724013 | G-C | Homo | ||
SBS | Chr5 | 4582177 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g08400 |
SBS | Chr5 | 6204750 | C-T | HET | ||
SBS | Chr7 | 12978961 | C-T | HET | ||
SBS | Chr7 | 24787724 | C-A | HET | ||
SBS | Chr7 | 29028455 | A-T | HET | ||
SBS | Chr7 | 4933199 | G-T | HET | ||
SBS | Chr7 | 643427 | C-A | HET | ||
SBS | Chr7 | 9300138 | C-T | Homo | ||
SBS | Chr8 | 10327758 | G-A | HET | ||
SBS | Chr8 | 16073786 | C-G | Homo | ||
SBS | Chr8 | 18398595 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g29950 |
SBS | Chr8 | 21828224 | T-A | HET | ||
SBS | Chr8 | 2275999 | A-T | HET | ||
SBS | Chr8 | 26813939 | A-T | Homo | ||
SBS | Chr9 | 18252010 | G-A | HET | ||
SBS | Chr9 | 18266196 | G-A | HET | ||
SBS | Chr9 | 8330241 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g14070 |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 1778731 | 1778741 | 10 | |
Deletion | Chr10 | 4802499 | 4802516 | 17 | |
Deletion | Chr10 | 5643577 | 5643586 | 9 | |
Deletion | Chr10 | 8111341 | 8111342 | 1 | |
Deletion | Chr10 | 9713150 | 9713153 | 3 | |
Deletion | Chr3 | 17790813 | 17790814 | 1 | |
Deletion | Chr5 | 20056310 | 20056320 | 10 | |
Deletion | Chr5 | 20768001 | 20779000 | 10999 | LOC_Os05g34970 |
Deletion | Chr5 | 24523551 | 24523558 | 7 | |
Deletion | Chr3 | 26061955 | 26061956 | 1 | LOC_Os03g46080 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 11823316 | 11823316 | 1 | |
Insertion | Chr9 | 22451814 | 22451815 | 2 | |
Insertion | Chr9 | 8057872 | 8057872 | 1 | LOC_Os09g13750![]() |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 5485742 | 6344957 | LOC_Os04g10160 |
Inversion | Chr4 | 5485748 | 6344958 | LOC_Os04g10160 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 728639 | Chr2 | 13225554 | 2 |
Translocation | Chr4 | 5672338 | Chr2 | 11399302 | LOC_Os04g10434 |
Translocation | Chr12 | 9417701 | Chr3 | 17629552 | |
Translocation | Chr12 | 16335281 | Chr7 | 3932764 | 2 |
Translocation | Chr10 | 17288480 | Chr9 | 19546310 | |
Translocation | Chr5 | 20368993 | Chr1 | 39261880 |