Search Results
| Mutant Information |
|---|
| Mutant Name | FN2377 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2377 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31809989 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g55260 |
| SBS | Chr1 | 34052181 | G-A | HET | STOP_GAINED | LOC_Os01g58920 |
| SBS | Chr1 | 38965678 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g67120 |
| SBS | Chr1 | 39305504 | A-C | HET | ||
| SBS | Chr2 | 10078461 | A-T | HET | ||
| SBS | Chr2 | 21802981 | C-T | HET | ||
| SBS | Chr2 | 26988451 | A-G | HET | ||
| SBS | Chr2 | 26988452 | T-C | HET | ||
| SBS | Chr2 | 26988453 | A-T | HET | ||
| SBS | Chr4 | 16492389 | G-A | Homo | ||
| SBS | Chr5 | 8414287 | C-T | Homo | ||
| SBS | Chr5 | 14329207 | C-T | Homo | ||
| SBS | Chr6 | 5220731 | G-A | Homo | ||
| SBS | Chr6 | 8319619 | T-C | HET | ||
| SBS | Chr6 | 9661296 | C-T | HET | ||
| SBS | Chr6 | 20095804 | C-T | HET | ||
| SBS | Chr6 | 22103637 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37400 |
| SBS | Chr7 | 6246836 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g11340 |
| SBS | Chr7 | 25324595 | A-G | HET | ||
| SBS | Chr8 | 7779747 | T-C | HET | ||
| SBS | Chr8 | 10855998 | A-G | HET | ||
| SBS | Chr8 | 11287797 | C-T | Homo | ||
| SBS | Chr8 | 11287798 | C-T | Homo | ||
| SBS | Chr8 | 23929179 | C-T | HET | ||
| SBS | Chr9 | 22026442 | A-T | Homo | ||
| SBS | Chr9 | 22199763 | G-A | Homo | ||
| SBS | Chr10 | 973036 | T-C | Homo | ||
| SBS | Chr10 | 15824395 | T-A | Homo | ||
| SBS | Chr11 | 6176662 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g11170 |
| SBS | Chr11 | 9438278 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g17030 |
| SBS | Chr11 | 21640306 | C-T | HET | ||
| SBS | Chr12 | 9419244 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g16450 |
| SBS | Chr12 | 21846961 | T-C | HET | ||
| SBS | Chr12 | 21870172 | G-A | HET | ||
| SBS | Chr12 | 25107234 | A-G | HET | ||
| SBS | Chr12 | 25107235 | G-A | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 356152 | 356153 | 1 | |
| Deletion | Chr7 | 1062481 | 1062489 | 8 | |
| Deletion | Chr3 | 5060229 | 5060234 | 5 | |
| Deletion | Chr11 | 9202867 | 9202871 | 4 | |
| Deletion | Chr12 | 11979507 | 11979661 | 154 | |
| Deletion | Chr8 | 12557649 | 12557658 | 9 | LOC_Os08g20967 |
| Deletion | Chr6 | 14555853 | 14555854 | 1 | LOC_Os06g24790 |
| Deletion | Chr8 | 17082454 | 17082462 | 8 | |
| Deletion | Chr3 | 18849951 | 18849953 | 2 | |
| Deletion | Chr1 | 19751133 | 19751134 | 1 | |
| Deletion | Chr2 | 20738503 | 20738512 | 9 | LOC_Os02g34590 |
| Deletion | Chr6 | 21064475 | 21064477 | 2 | |
| Deletion | Chr1 | 21530001 | 21579000 | 48999 | 4 |
| Deletion | Chr5 | 23050593 | 23050594 | 1 | |
| Deletion | Chr8 | 23714565 | 23714573 | 8 | |
| Deletion | Chr4 | 24999681 | 24999702 | 21 | |
| Deletion | Chr2 | 27006350 | 27006355 | 5 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 27107462 | 27210341 | 2 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 705150 | Chr2 | 18649007 |