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| Mutant Information |
|---|
| Mutant Name | FN2379 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2379 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16460219 | C-A | HET | ||
| SBS | Chr1 | 17558010 | C-T | HET | ||
| SBS | Chr1 | 19671802 | G-A | HET | ||
| SBS | Chr1 | 26295202 | A-G | HET | ||
| SBS | Chr10 | 12658184 | C-A | HET | ||
| SBS | Chr10 | 8424991 | G-A | Homo | ||
| SBS | Chr11 | 17784818 | G-T | HET | ||
| SBS | Chr11 | 18592274 | T-G | HET | ||
| SBS | Chr11 | 301323 | G-A | HET | ||
| SBS | Chr11 | 301327 | C-A | HET | ||
| SBS | Chr11 | 301342 | G-C | HET | ||
| SBS | Chr12 | 12418375 | G-A | HET | ||
| SBS | Chr12 | 23897730 | C-T | HET | ||
| SBS | Chr2 | 33786909 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g55150 |
| SBS | Chr2 | 4358256 | T-G | Homo | ||
| SBS | Chr2 | 7145044 | G-A | HET | ||
| SBS | Chr3 | 11106272 | C-G | HET | ||
| SBS | Chr3 | 22062447 | C-T | HET | ||
| SBS | Chr3 | 26484048 | T-G | Homo | ||
| SBS | Chr3 | 3523262 | C-T | HET | ||
| SBS | Chr3 | 4804224 | A-G | HET | ||
| SBS | Chr3 | 7738164 | C-A | HET | ||
| SBS | Chr4 | 241023 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g01310 |
| SBS | Chr4 | 4892656 | G-A | HET | ||
| SBS | Chr4 | 661564 | C-T | HET | ||
| SBS | Chr5 | 15296690 | C-T | HET | ||
| SBS | Chr5 | 15607292 | C-T | HET | ||
| SBS | Chr5 | 29554137 | A-G | Homo | ||
| SBS | Chr5 | 6887687 | G-A | HET | ||
| SBS | Chr5 | 9131744 | G-A | HET | ||
| SBS | Chr6 | 9874595 | C-T | HET | ||
| SBS | Chr7 | 1181838 | G-T | HET | ||
| SBS | Chr7 | 17872614 | A-G | HET | ||
| SBS | Chr7 | 18694613 | C-T | HET | ||
| SBS | Chr7 | 1997271 | G-T | HET | ||
| SBS | Chr7 | 1997272 | A-T | HET | ||
| SBS | Chr7 | 22482079 | G-A | HET | ||
| SBS | Chr8 | 2692427 | G-A | Homo | ||
| SBS | Chr8 | 6625664 | A-G | HET | ||
| SBS | Chr9 | 21398825 | A-G | HET | ||
| SBS | Chr9 | 4091276 | C-T | Homo |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 163188 | 163195 | 7 | LOC_Os07g01270 |
| Deletion | Chr2 | 1260589 | 1260593 | 4 | |
| Deletion | Chr7 | 2030914 | 2030920 | 6 | |
| Deletion | Chr6 | 4792897 | 4792912 | 15 | |
| Deletion | Chr3 | 4912531 | 4912532 | 1 | |
| Deletion | Chr4 | 6148742 | 6148746 | 4 | LOC_Os04g11250 |
| Deletion | Chr5 | 10336050 | 10336061 | 11 | |
| Deletion | Chr3 | 11977222 | 11977246 | 24 | |
| Deletion | Chr12 | 15988578 | 15988603 | 25 | |
| Deletion | Chr8 | 16727810 | 16727811 | 1 | |
| Deletion | Chr10 | 17032900 | 17032902 | 2 | |
| Deletion | Chr3 | 17181566 | 17181572 | 6 | |
| Deletion | Chr12 | 17936139 | 17936146 | 7 | |
| Deletion | Chr10 | 21672784 | 21672790 | 6 | |
| Deletion | Chr3 | 22106372 | 22106374 | 2 | |
| Deletion | Chr6 | 22261225 | 22261235 | 10 | LOC_Os06g37600 |
| Deletion | Chr2 | 22565996 | 22565998 | 2 | |
| Deletion | Chr6 | 25366621 | 25366627 | 6 | |
| Deletion | Chr1 | 30721009 | 30721010 | 1 | LOC_Os01g53480 |
| Deletion | Chr1 | 33723634 | 33723635 | 1 |
Insertions: 5
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 15993601 | Chr1 | 15643123 |