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Mutant Information |
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Mutant Name | FN2383 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2383 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 26
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 33432004 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g57800 |
SBS | Chr1 | 37805839 | G-C | Homo | ||
SBS | Chr10 | 15600127 | G-A | HET | ||
SBS | Chr10 | 21058409 | T-C | HET | ||
SBS | Chr11 | 22086456 | C-G | HET | ||
SBS | Chr11 | 5743622 | T-A | HET | ||
SBS | Chr12 | 24272538 | C-T | HET | ||
SBS | Chr2 | 31384295 | G-A | HET | ||
SBS | Chr2 | 32323847 | G-A | HET | ||
SBS | Chr2 | 34469054 | C-G | HET | ||
SBS | Chr2 | 35351021 | A-T | HET | ||
SBS | Chr2 | 7650374 | A-T | HET | ||
SBS | Chr3 | 18197693 | G-T | HET | ||
SBS | Chr3 | 36285174 | C-T | HET | ||
SBS | Chr3 | 6432302 | A-G | HET | ||
SBS | Chr4 | 21923802 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g35960 |
SBS | Chr4 | 30463901 | A-T | HET | ||
SBS | Chr5 | 18850878 | G-A | Homo | ||
SBS | Chr6 | 19670078 | C-A | HET | ||
SBS | Chr6 | 2251654 | C-T | HET | ||
SBS | Chr6 | 29004765 | G-A | Homo | ||
SBS | Chr6 | 29005896 | A-G | Homo | ||
SBS | Chr7 | 11204872 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g18910 |
SBS | Chr8 | 14416853 | C-G | HET | ||
SBS | Chr8 | 3715041 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g06580 |
SBS | Chr8 | 4879379 | G-T | HET |
Deletions: 11
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 28788277 | 28788278 | 2 | |
Insertion | Chr7 | 4124573 | 4124574 | 2 |
No Inversion
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 223061 | Chr4 | 32065612 | 2 |
Translocation | Chr9 | 7836052 | Chr5 | 10185767 | |
Translocation | Chr11 | 13710946 | Chr2 | 13607853 | |
Translocation | Chr11 | 14502016 | Chr2 | 6629518 | 2 |
Translocation | Chr6 | 16817203 | Chr1 | 29886771 | |
Translocation | Chr4 | 17228510 | Chr3 | 26761877 | 2 |
Translocation | Chr2 | 26568590 | Chr1 | 4970615 |