Search Results
| Mutant Information |
|---|
| Mutant Name | FN2385 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2385 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8602463 | G-A | HET | ||
| SBS | Chr1 | 19870490 | A-T | HET | ||
| SBS | Chr2 | 25366945 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g42180 |
| SBS | Chr2 | 25581977 | C-A | HET | ||
| SBS | Chr3 | 453961 | A-G | HET | ||
| SBS | Chr4 | 2189412 | G-C | HET | ||
| SBS | Chr4 | 4321277 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g08080 |
| SBS | Chr4 | 6545209 | G-A | Homo | ||
| SBS | Chr4 | 9701313 | C-G | HET | ||
| SBS | Chr4 | 9701314 | C-T | HET | ||
| SBS | Chr4 | 23288394 | C-T | Homo | ||
| SBS | Chr4 | 33348556 | G-A | HET | ||
| SBS | Chr5 | 13891447 | A-C | HET | ||
| SBS | Chr5 | 18020615 | T-C | HET | ||
| SBS | Chr5 | 25225164 | G-A | HET | ||
| SBS | Chr5 | 25711245 | G-A | HET | ||
| SBS | Chr5 | 27229451 | A-T | HET | ||
| SBS | Chr6 | 13011278 | A-G | HET | ||
| SBS | Chr6 | 15407408 | T-A | HET | ||
| SBS | Chr6 | 23731229 | G-C | HET | ||
| SBS | Chr6 | 28561850 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g47130 |
| SBS | Chr7 | 7564195 | A-G | Homo | ||
| SBS | Chr7 | 11776520 | G-A | HET | ||
| SBS | Chr7 | 18818640 | C-T | HET | ||
| SBS | Chr7 | 21270296 | C-T | HET | ||
| SBS | Chr7 | 26492874 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g44340 |
| SBS | Chr8 | 7731067 | A-G | Homo | ||
| SBS | Chr8 | 20444446 | G-A | Homo | ||
| SBS | Chr8 | 21470819 | T-C | HET | ||
| SBS | Chr9 | 3225923 | A-G | Homo | ||
| SBS | Chr9 | 5702332 | T-C | Homo | ||
| SBS | Chr9 | 7431645 | A-T | HET | ||
| SBS | Chr9 | 18110338 | G-A | HET | ||
| SBS | Chr9 | 19897721 | G-T | HET | ||
| SBS | Chr10 | 4528322 | C-T | HET | ||
| SBS | Chr10 | 10043080 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g20020 |
| SBS | Chr10 | 15466785 | C-T | Homo | ||
| SBS | Chr11 | 4580771 | C-T | Homo | ||
| SBS | Chr11 | 12700186 | G-A | HET | ||
| SBS | Chr12 | 21811792 | A-T | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 3104876 | 3104883 | 7 | |
| Deletion | Chr5 | 6974190 | 6974196 | 6 | |
| Deletion | Chr8 | 9171351 | 9171367 | 16 | |
| Deletion | Chr10 | 13158461 | 13158465 | 4 | |
| Deletion | Chr7 | 14251651 | 14251654 | 3 | LOC_Os07g25010 |
| Deletion | Chr6 | 15807108 | 15807123 | 15 | |
| Deletion | Chr7 | 21285918 | 21285930 | 12 | |
| Deletion | Chr8 | 25558402 | 25558405 | 3 | LOC_Os08g40370 |
| Deletion | Chr4 | 26762635 | 26762644 | 9 | |
| Deletion | Chr7 | 26879122 | 26879123 | 1 | |
| Deletion | Chr7 | 27424180 | 27424183 | 3 |
Insertions: 5
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 25586846 | Chr11 | 24958485 |