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| Mutant Information |
|---|
| Mutant Name | FN239-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN239-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10947051 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 19599476 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 25447262 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 9055591 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 23129221 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g38860 |
| SBS | Chr11 | 8087822 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 9586381 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 11796995 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 25342565 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 26184816 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr12 | 27144775 | A-C | HET | INTERGENIC | |
| SBS | Chr12 | 3167435 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 187907 | A-G | HET | INTRON | |
| SBS | Chr3 | 10272016 | A-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 16817056 | T-A | HET | INTRON | |
| SBS | Chr3 | 18778335 | C-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 20903739 | A-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 21135640 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 24637859 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 2039521 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 27430028 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 30851457 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 4426336 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr5 | 12498179 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 9230362 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 20045526 | G-C | HET | INTERGENIC | |
| SBS | Chr7 | 7462760 | A-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 13202035 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 6625498 | A-T | HET | INTERGENIC |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 3567638 | 3567648 | 10 | |
| Deletion | Chr8 | 10378555 | 10378559 | 4 | |
| Deletion | Chr12 | 14527759 | 14527760 | 1 | |
| Deletion | Chr2 | 17246539 | 17246547 | 8 | |
| Deletion | Chr3 | 18539458 | 18539472 | 14 | LOC_Os03g32420 |
| Deletion | Chr3 | 20978104 | 20978111 | 7 | |
| Deletion | Chr7 | 24019236 | 24019240 | 4 | |
| Deletion | Chr12 | 24526202 | 24526204 | 2 | |
| Deletion | Chr1 | 25775749 | 25775753 | 4 | LOC_Os01g45430 |
| Deletion | Chr3 | 28582268 | 28582285 | 17 | |
| Deletion | Chr4 | 30393096 | 30393098 | 2 | |
| Deletion | Chr6 | 31057425 | 31057441 | 16 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 23050004 | 23050005 | 2 | |
| Insertion | Chr11 | 3710388 | 3710389 | 2 | |
| Insertion | Chr2 | 12864063 | 12864066 | 4 | |
| Insertion | Chr8 | 7910069 | 7910069 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 9365492 | 10059704 | 2 |
| Inversion | Chr8 | 26444831 | 27950908 | LOC_Os08g41880 |
| Inversion | Chr8 | 27950909 | 28127951 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 8214811 | Chr2 | 28383194 | |
| Translocation | Chr12 | 9694980 | Chr11 | 8617754 | |
| Translocation | Chr10 | 10312292 | Chr4 | 5525808 | |
| Translocation | Chr11 | 22798819 | Chr5 | 29712030 | |
| Translocation | Chr8 | 22804012 | Chr2 | 16275328 | |
| Translocation | Chr11 | 26996160 | Chr1 | 14672368 |