Search Results
| Mutant Information |
|---|
| Mutant Name | FN2390 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2390 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8066512 | C-A | HET | ||
| SBS | Chr1 | 8066513 | C-T | HET | ||
| SBS | Chr1 | 19034991 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g34530 |
| SBS | Chr1 | 29392416 | C-A | Homo | ||
| SBS | Chr1 | 32383153 | A-G | Homo | ||
| SBS | Chr1 | 38485685 | C-A | HET | ||
| SBS | Chr2 | 4158724 | T-C | Homo | ||
| SBS | Chr2 | 5730899 | C-A | Homo | ||
| SBS | Chr2 | 5730900 | A-T | Homo | ||
| SBS | Chr2 | 8350168 | C-A | Homo | ||
| SBS | Chr2 | 14350260 | T-A | HET | ||
| SBS | Chr2 | 20254443 | T-C | HET | ||
| SBS | Chr2 | 21453372 | T-G | HET | ||
| SBS | Chr2 | 30596419 | T-A | HET | ||
| SBS | Chr3 | 13420904 | A-C | HET | ||
| SBS | Chr3 | 19700994 | G-A | HET | ||
| SBS | Chr3 | 19735294 | T-G | HET | ||
| SBS | Chr3 | 20602323 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g37194 |
| SBS | Chr4 | 3323481 | G-T | HET | STOP_GAINED | LOC_Os04g06360 |
| SBS | Chr6 | 10761517 | G-A | HET | ||
| SBS | Chr6 | 27387166 | T-C | Homo | ||
| SBS | Chr6 | 29073340 | A-C | Homo | ||
| SBS | Chr7 | 7120952 | T-A | Homo | ||
| SBS | Chr7 | 12400244 | G-A | Homo | ||
| SBS | Chr7 | 25695020 | T-C | Homo | ||
| SBS | Chr8 | 4740010 | A-G | HET | ||
| SBS | Chr8 | 6628888 | C-T | HET | ||
| SBS | Chr8 | 23279410 | G-A | HET | ||
| SBS | Chr9 | 2144242 | C-T | Homo | ||
| SBS | Chr9 | 9212620 | C-T | Homo | ||
| SBS | Chr9 | 11267171 | A-T | HET | ||
| SBS | Chr9 | 21796555 | C-T | Homo | ||
| SBS | Chr10 | 627549 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g01984 |
| SBS | Chr11 | 1174554 | T-C | Homo | ||
| SBS | Chr11 | 26116240 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g43290 |
| SBS | Chr12 | 20144229 | G-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 175662 | 175663 | 1 | |
| Deletion | Chr8 | 624214 | 624223 | 9 | |
| Deletion | Chr3 | 4414986 | 4414996 | 10 | |
| Deletion | Chr2 | 5905421 | 5905430 | 9 | |
| Deletion | Chr11 | 6666852 | 6666859 | 7 | |
| Deletion | Chr5 | 10941804 | 10941815 | 11 | |
| Deletion | Chr8 | 12180207 | 12180210 | 3 | |
| Deletion | Chr5 | 13286614 | 13286623 | 9 | |
| Deletion | Chr4 | 14539534 | 14539539 | 5 | |
| Deletion | Chr4 | 14760212 | 14760228 | 16 | |
| Deletion | Chr7 | 14916784 | 14916786 | 2 | |
| Deletion | Chr5 | 20954879 | 20954883 | 4 | LOC_Os05g35290 |
| Deletion | Chr3 | 25241879 | 25241886 | 7 | |
| Deletion | Chr3 | 31682143 | 31682146 | 3 | |
| Deletion | Chr1 | 34744965 | 34744970 | 5 | |
| Deletion | Chr1 | 36339146 | 36339169 | 23 |
No Insertion
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4126991 | Chr1 | 3219748 | |
| Translocation | Chr5 | 10723078 | Chr3 | 19591561 | 2 |
| Translocation | Chr12 | 24586754 | Chr1 | 2640511 | LOC_Os12g39800 |
| Translocation | Chr8 | 27374378 | Chr6 | 2829541 | 2 |
| Translocation | Chr11 | 28480734 | Chr4 | 3329198 |