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| Mutant Information |
|---|
| Mutant Name | FN2392 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2392 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11616312 | C-A | HET | ||
| SBS | Chr1 | 13019073 | C-T | HET | ||
| SBS | Chr1 | 34585996 | A-G | HET | ||
| SBS | Chr1 | 39921475 | T-C | HET | ||
| SBS | Chr10 | 1080963 | C-T | Homo | ||
| SBS | Chr10 | 10992823 | T-C | HET | ||
| SBS | Chr10 | 10992824 | A-C | HET | ||
| SBS | Chr10 | 3250728 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g06310 |
| SBS | Chr11 | 15123266 | A-T | Homo | ||
| SBS | Chr12 | 1021160 | G-T | HET | ||
| SBS | Chr12 | 21060350 | A-G | Homo | ||
| SBS | Chr12 | 2450856 | C-A | HET | ||
| SBS | Chr2 | 22657181 | A-G | HET | ||
| SBS | Chr2 | 5540908 | G-A | HET | ||
| SBS | Chr3 | 12933213 | T-C | HET | ||
| SBS | Chr3 | 16342965 | C-A | HET | ||
| SBS | Chr3 | 22576033 | C-T | HET | ||
| SBS | Chr3 | 40357 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g01060 |
| SBS | Chr4 | 17314302 | T-A | HET | ||
| SBS | Chr4 | 19135908 | C-T | HET | ||
| SBS | Chr4 | 2735488 | G-A | HET | ||
| SBS | Chr4 | 2735490 | G-A | HET | ||
| SBS | Chr4 | 2735495 | G-A | HET | ||
| SBS | Chr4 | 3130704 | G-A | HET | ||
| SBS | Chr4 | 7544257 | T-C | HET | ||
| SBS | Chr5 | 19040523 | G-A | HET | ||
| SBS | Chr5 | 19956943 | C-T | HET | ||
| SBS | Chr5 | 6473623 | G-C | Homo | ||
| SBS | Chr6 | 12034262 | T-C | HET | ||
| SBS | Chr6 | 12324702 | T-C | HET | ||
| SBS | Chr6 | 14527776 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g24730 |
| SBS | Chr7 | 13704070 | G-A | HET | ||
| SBS | Chr7 | 28754322 | C-A | Homo | ||
| SBS | Chr8 | 10497348 | G-C | HET | ||
| SBS | Chr8 | 21323322 | C-T | HET | ||
| SBS | Chr8 | 22552128 | T-C | HET | ||
| SBS | Chr8 | 25623436 | A-T | HET | ||
| SBS | Chr8 | 25623437 | C-T | HET | ||
| SBS | Chr8 | 7069536 | C-T | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 3936084 | 3936088 | 4 | LOC_Os11g07720 |
| Deletion | Chr3 | 4421420 | 4421423 | 3 | |
| Deletion | Chr4 | 5358724 | 5358727 | 3 | |
| Deletion | Chr11 | 5568400 | 5568402 | 2 | |
| Deletion | Chr3 | 6167502 | 6167510 | 8 | |
| Deletion | Chr8 | 11994008 | 11994015 | 7 | |
| Deletion | Chr4 | 12644897 | 12644900 | 3 | |
| Deletion | Chr2 | 15182474 | 15182482 | 8 | |
| Deletion | Chr10 | 16876546 | 16876547 | 1 | |
| Deletion | Chr8 | 26433332 | 26433335 | 3 | |
| Deletion | Chr7 | 28317916 | 28317927 | 11 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 19286289 | 19286290 | 2 | |
| Insertion | Chr3 | 20637990 | 20637990 | 1 | |
| Insertion | Chr4 | 3904617 | 3904617 | 1 | |
| Insertion | Chr5 | 29017211 | 29017212 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 9829116 | 10704551 | LOC_Os10g19300 |
| Inversion | Chr10 | 9829118 | 10704550 | LOC_Os10g19300 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 7352952 | Chr5 | 1239355 | LOC_Os09g12800 |
| Translocation | Chr12 | 13936898 | Chr4 | 16502356 | LOC_Os12g24420 |
| Translocation | Chr7 | 16324835 | Chr3 | 22066452 | |
| Translocation | Chr5 | 22928574 | Chr2 | 33761598 | 2 |
| Translocation | Chr8 | 25513800 | Chr2 | 33761617 | 2 |
| Translocation | Chr8 | 25514722 | Chr5 | 22928564 |