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Mutant Information |
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Mutant Name | FN2397 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2397 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 43
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 12436016 | G-A | HET | ||
SBS | Chr1 | 12837085 | G-A | HET | ||
SBS | Chr1 | 21210217 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g37880 |
SBS | Chr1 | 5414691 | G-A | Homo | ||
SBS | Chr1 | 6724281 | C-A | HET | ||
SBS | Chr11 | 15024031 | C-T | Homo | ||
SBS | Chr11 | 20442580 | G-T | HET | ||
SBS | Chr11 | 20528778 | A-G | HET | ||
SBS | Chr11 | 6159018 | C-G | Homo | ||
SBS | Chr11 | 7087182 | C-A | Homo | ||
SBS | Chr12 | 1034923 | G-A | Homo | ||
SBS | Chr12 | 21214458 | A-G | HET | ||
SBS | Chr12 | 22645744 | A-G | HET | ||
SBS | Chr12 | 3838270 | C-T | HET | ||
SBS | Chr12 | 4177832 | C-T | HET | ||
SBS | Chr12 | 5013490 | G-A | HET | ||
SBS | Chr12 | 9178330 | G-T | HET | ||
SBS | Chr2 | 13961981 | T-G | Homo | ||
SBS | Chr2 | 25837495 | G-T | HET | ||
SBS | Chr2 | 29179782 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g47730 |
SBS | Chr2 | 34820446 | T-C | HET | ||
SBS | Chr3 | 12147081 | G-A | HET | ||
SBS | Chr3 | 12723619 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g22190 |
SBS | Chr3 | 14429808 | A-G | HET | ||
SBS | Chr3 | 15622059 | C-T | HET | ||
SBS | Chr3 | 21754162 | C-G | HET | ||
SBS | Chr3 | 29745978 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g51880 |
SBS | Chr3 | 33743771 | A-C | Homo | ||
SBS | Chr4 | 1346261 | G-A | HET | ||
SBS | Chr4 | 1346262 | A-C | HET | ||
SBS | Chr4 | 20997219 | C-G | HET | ||
SBS | Chr4 | 27632345 | C-T | HET | ||
SBS | Chr4 | 35316773 | C-A | HET | ||
SBS | Chr5 | 28818479 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g50270 |
SBS | Chr6 | 21096039 | C-T | HET | ||
SBS | Chr6 | 24470481 | A-C | Homo | ||
SBS | Chr6 | 27494796 | A-T | Homo | ||
SBS | Chr6 | 31241890 | G-A | HET | ||
SBS | Chr7 | 10563671 | G-A | HET | ||
SBS | Chr8 | 12823896 | A-T | HET | ||
SBS | Chr8 | 1812235 | A-T | HET | ||
SBS | Chr9 | 12006475 | G-A | HET | ||
SBS | Chr9 | 21534651 | G-A | Homo |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 88397 | 88399 | 2 | |
Deletion | Chr1 | 8578105 | 8578107 | 2 | |
Deletion | Chr8 | 9765150 | 9765152 | 2 | |
Deletion | Chr7 | 12706422 | 12706442 | 20 | LOC_Os07g22580 |
Deletion | Chr10 | 16565672 | 16565673 | 1 | |
Deletion | Chr7 | 19860437 | 19860441 | 4 | |
Deletion | Chr12 | 19955353 | 19955360 | 7 | |
Deletion | Chr2 | 20825755 | 20825756 | 1 | |
Deletion | Chr6 | 22187993 | 22188009 | 16 | |
Deletion | Chr12 | 23195001 | 23205000 | 9999 | 2 |
Deletion | Chr8 | 23371646 | 23371651 | 5 | LOC_Os08g36940 |
Deletion | Chr7 | 24256533 | 24256541 | 8 | |
Deletion | Chr3 | 34371993 | 34371996 | 3 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 24546132 | 24546132 | 1 | |
Insertion | Chr4 | 11392408 | 11392409 | 2 |
Inversions: 6
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 22493367 | 22604951 | 2 |
Inversion | Chr12 | 22604980 | 23205191 | LOC_Os12g36890 |
Inversion | Chr1 | 25372136 | 26001675 | |
Inversion | Chr1 | 25372321 | 26001681 | |
Inversion | Chr1 | 25927097 | 25989160 | LOC_Os01g45640 |
Inversion | Chr1 | 25927107 | 26197150 | LOC_Os01g45640 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 11861297 | Chr1 | 12128460 | LOC_Os10g22820 |
Translocation | Chr10 | 11861969 | Chr1 | 12128463 | |
Translocation | Chr4 | 15915435 | Chr3 | 32469434 | |
Translocation | Chr12 | 16959656 | Chr2 | 611342 |