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Mutant Information

Mutant NameFN2397 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2397 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 43
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112436016G-AHET
SBSChr112837085G-AHET
SBSChr121210217G-THETNON_SYNONYMOUS_CODINGLOC_Os01g37880
SBSChr15414691G-AHomo
SBSChr16724281C-AHET
SBSChr1115024031C-THomo
SBSChr1120442580G-THET
SBSChr1120528778A-GHET
SBSChr116159018C-GHomo
SBSChr117087182C-AHomo
SBSChr121034923G-AHomo
SBSChr1221214458A-GHET
SBSChr1222645744A-GHET
SBSChr123838270C-THET
SBSChr124177832C-THET
SBSChr125013490G-AHET
SBSChr129178330G-THET
SBSChr213961981T-GHomo
SBSChr225837495G-THET
SBSChr229179782C-THETNON_SYNONYMOUS_CODINGLOC_Os02g47730
SBSChr234820446T-CHET
SBSChr312147081G-AHET
SBSChr312723619A-GHETNON_SYNONYMOUS_CODINGLOC_Os03g22190
SBSChr314429808A-GHET
SBSChr315622059C-THET
SBSChr321754162C-GHET
SBSChr329745978G-CHomoNON_SYNONYMOUS_CODINGLOC_Os03g51880
SBSChr333743771A-CHomo
SBSChr41346261G-AHET
SBSChr41346262A-CHET
SBSChr420997219C-GHET
SBSChr427632345C-THET
SBSChr435316773C-AHET
SBSChr528818479G-THETNON_SYNONYMOUS_CODINGLOC_Os05g50270
SBSChr621096039C-THET
SBSChr624470481A-CHomo
SBSChr627494796A-THomo
SBSChr631241890G-AHET
SBSChr710563671G-AHET
SBSChr812823896A-THET
SBSChr81812235A-THET
SBSChr912006475G-AHET
SBSChr921534651G-AHomo

Deletions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr488397883992
DeletionChr1857810585781072
DeletionChr8976515097651522
DeletionChr7127064221270644220LOC_Os07g22580
DeletionChr1016565672165656731
DeletionChr719860437198604414
DeletionChr1219955353199553607
DeletionChr220825755208257561
DeletionChr6221879932218800916
DeletionChr12231950012320500099992
DeletionChr823371646233716515LOC_Os08g36940
DeletionChr724256533242565418
DeletionChr334371993343719963

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1224546132245461321
InsertionChr411392408113924092

Inversions: 6
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr1222493367226049512
InversionChr122260498023205191LOC_Os12g36890
InversionChr12537213626001675
InversionChr12537232126001681
InversionChr12592709725989160LOC_Os01g45640
InversionChr12592710726197150LOC_Os01g45640

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1011861297Chr112128460LOC_Os10g22820
TranslocationChr1011861969Chr112128463
TranslocationChr415915435Chr332469434
TranslocationChr1216959656Chr2611342