Search Results
| Mutant Information |
|---|
| Mutant Name | FN2399 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2399 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17783841 | G-A | HET | ||
| SBS | Chr1 | 22164655 | A-G | Homo | ||
| SBS | Chr1 | 28194750 | T-C | HET | ||
| SBS | Chr2 | 9328863 | G-T | HET | ||
| SBS | Chr2 | 34669383 | A-G | HET | ||
| SBS | Chr3 | 1810594 | A-T | HET | ||
| SBS | Chr3 | 6971399 | C-A | Homo | ||
| SBS | Chr3 | 15738599 | C-G | HET | ||
| SBS | Chr3 | 21691461 | T-C | Homo | ||
| SBS | Chr3 | 31027138 | C-T | HET | ||
| SBS | Chr3 | 34770299 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g61220 |
| SBS | Chr4 | 31764340 | C-T | HET | ||
| SBS | Chr5 | 6613827 | G-T | HET | ||
| SBS | Chr5 | 16352376 | G-A | HET | ||
| SBS | Chr5 | 21195630 | C-T | HET | ||
| SBS | Chr7 | 15042155 | C-T | HET | ||
| SBS | Chr8 | 1726901 | C-T | HET | SPLICE_SITE_DONOR | LOC_Os08g03650 |
| SBS | Chr8 | 18705606 | C-T | Homo | ||
| SBS | Chr8 | 18705610 | C-T | Homo | ||
| SBS | Chr9 | 16440121 | T-C | Homo | ||
| SBS | Chr9 | 22316513 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g38850 |
| SBS | Chr9 | 22316522 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g38850 |
| SBS | Chr10 | 4496784 | G-A | HET | ||
| SBS | Chr11 | 4368596 | C-T | HET | ||
| SBS | Chr11 | 8525552 | G-A | HET | ||
| SBS | Chr11 | 10859163 | C-A | HET | ||
| SBS | Chr11 | 14927949 | A-G | HET | ||
| SBS | Chr11 | 14927952 | G-A | HET | ||
| SBS | Chr11 | 22920699 | A-T | Homo | ||
| SBS | Chr11 | 25180415 | G-C | Homo | ||
| SBS | Chr11 | 25180458 | G-A | Homo | ||
| SBS | Chr11 | 25180459 | G-A | Homo |
Deletions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 9539540 | 9539541 | 1 | LOC_Os04g17440 |
| Deletion | Chr3 | 11358001 | 11416000 | 57999 | 7 |
| Deletion | Chr8 | 15152360 | 15152369 | 9 | |
| Deletion | Chr5 | 22427433 | 22427438 | 5 | |
| Deletion | Chr5 | 23407063 | 23407068 | 5 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 22241523 | 22241524 | 2 | LOC_Os11g37670 |
| Insertion | Chr6 | 31526 | 31527 | 2 | |
| Insertion | Chr6 | 7390721 | 7390721 | 1 | LOC_Os06g13430 |
| Insertion | Chr6 | 20152409 | 20152417 | 9 | |
| Insertion | Chr10 | 4766308 | 4766310 | 3 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 1233524 | 1737221 | LOC_Os03g03020 |
| Inversion | Chr3 | 1247870 | 1251827 | |
| Inversion | Chr1 | 19822604 | 19823068 |
Translocations: 14
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 262272 | Chr6 | 14440082 | |
| Translocation | Chr3 | 1239483 | Chr1 | 5446263 | 2 |
| Translocation | Chr3 | 1247887 | Chr1 | 5446273 | |
| Translocation | Chr10 | 3120022 | Chr1 | 23590359 | |
| Translocation | Chr9 | 4916906 | Chr2 | 11824568 | |
| Translocation | Chr7 | 5266803 | Chr3 | 1737878 | 2 |
| Translocation | Chr12 | 5819918 | Chr3 | 2260684 | |
| Translocation | Chr10 | 7833402 | Chr9 | 2382166 | 2 |
| Translocation | Chr12 | 9190664 | Chr3 | 1737871 | 2 |
| Translocation | Chr12 | 9190682 | Chr3 | 1737237 | |
| Translocation | Chr9 | 9371646 | Chr7 | 4204682 | |
| Translocation | Chr10 | 12429129 | Chr4 | 4810194 | |
| Translocation | Chr9 | 16416491 | Chr2 | 2673877 | |
| Translocation | Chr3 | 35300948 | Chr2 | 16480613 | 2 |