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| Mutant Information |
|---|
| Mutant Name | FN2404 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2404 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 34392738 | C-T | HET | ||
| SBS | Chr1 | 42702886 | A-C | HET | ||
| SBS | Chr10 | 11344925 | A-T | HET | ||
| SBS | Chr10 | 542430 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g01840 |
| SBS | Chr10 | 9575151 | C-T | Homo | ||
| SBS | Chr11 | 18374316 | A-G | HET | ||
| SBS | Chr12 | 4233083 | G-A | HET | ||
| SBS | Chr12 | 4967402 | T-C | Homo | ||
| SBS | Chr2 | 17202110 | A-C | Homo | ||
| SBS | Chr2 | 7374812 | C-G | Homo | ||
| SBS | Chr3 | 20077461 | G-T | Homo | ||
| SBS | Chr3 | 22643333 | G-A | HET | ||
| SBS | Chr3 | 23853513 | G-A | HET | ||
| SBS | Chr3 | 33358846 | T-C | HET | ||
| SBS | Chr4 | 22207040 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g36780 |
| SBS | Chr5 | 10787953 | T-A | HET | ||
| SBS | Chr5 | 22818769 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g38910 |
| SBS | Chr5 | 4306360 | T-C | HET | ||
| SBS | Chr5 | 4734569 | T-C | HET | ||
| SBS | Chr7 | 27476431 | G-A | HET | ||
| SBS | Chr7 | 7888845 | T-A | HET | ||
| SBS | Chr8 | 25599946 | G-A | HET | STOP_GAINED | LOC_Os08g40460 |
| SBS | Chr8 | 27440695 | A-T | HET | ||
| SBS | Chr8 | 9423852 | T-A | HET | ||
| SBS | Chr9 | 21121441 | T-C | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1599726 | 1599728 | 2 | |
| Deletion | Chr6 | 5290819 | 5290822 | 3 | |
| Deletion | Chr5 | 6340018 | 6340028 | 10 | |
| Deletion | Chr3 | 7009936 | 7009937 | 1 | |
| Deletion | Chr5 | 8233093 | 8233095 | 2 | |
| Deletion | Chr10 | 8984871 | 8984878 | 7 | |
| Deletion | Chr5 | 11144196 | 11144197 | 1 | LOC_Os05g19200 |
| Deletion | Chr3 | 14300925 | 14300935 | 10 | |
| Deletion | Chr11 | 14592036 | 14592037 | 1 | |
| Deletion | Chr11 | 15308907 | 15308916 | 9 | |
| Deletion | Chr6 | 16353473 | 16353481 | 8 | |
| Deletion | Chr5 | 16778562 | 16778564 | 2 | |
| Deletion | Chr5 | 17744961 | 17744962 | 1 | |
| Deletion | Chr7 | 21019633 | 21019634 | 1 | |
| Deletion | Chr2 | 26368945 | 26368952 | 7 | |
| Deletion | Chr3 | 28628464 | 28628479 | 15 | |
| Deletion | Chr1 | 33749077 | 33749086 | 9 | |
| Deletion | Chr1 | 37686372 | 37686376 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 23000115 | 23000116 | 2 | |
| Insertion | Chr2 | 3592869 | 3592872 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 6608273 | 6949858 | LOC_Os02g12654 |
| Inversion | Chr2 | 6608280 | 6949864 | LOC_Os02g12654 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 22550435 | Chr1 | 2473716 | |
| Translocation | Chr11 | 26002459 | Chr6 | 20608561 |