Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13688096	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g24294
SBS	Chr1	19608010	C-T	HET
SBS	Chr1	237593	G-A	HET
SBS	Chr10	20596721	A-T	Homo
SBS	Chr11	13021301	T-C	HET
SBS	Chr11	4921806	A-T	HET
SBS	Chr12	1073646	A-T	Homo
SBS	Chr12	14217714	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24790
SBS	Chr12	21099668	T-A	HET
SBS	Chr12	8357124	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14630
SBS	Chr2	21874133	A-G	HET
SBS	Chr2	2297823	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04940
SBS	Chr3	12850561	C-T	HET
SBS	Chr3	23831512	A-G	HET
SBS	Chr3	24069006	G-C	HET
SBS	Chr3	33127137	C-A	HET
SBS	Chr4	12493438	T-C	HET
SBS	Chr4	12964489	C-A	HET
SBS	Chr4	4477567	T-A	HET
SBS	Chr4	6594780	G-A	HET
SBS	Chr4	9022285	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16590
SBS	Chr5	20080542	C-T	Homo
SBS	Chr6	12276370	G-A	HET
SBS	Chr7	19095687	C-A	Homo
SBS	Chr7	21052614	C-G	HET
SBS	Chr7	7106783	T-C	Homo
SBS	Chr8	25262483	G-A	HET
SBS	Chr9	11605832	G-T	HET
SBS	Chr9	22395327	T-A	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	224937	224941	4
Deletion	Chr7	404001	497000	92999	19
Deletion	Chr4	2052106	2052123	17
Deletion	Chr5	2594112	2594122	10
Deletion	Chr8	3611653	3611663	10
Deletion	Chr12	5518325	5518326	1
Deletion	Chr1	8162850	8162851	1
Deletion	Chr7	8272336	8272339	3
Deletion	Chr1	11295311	11295313	2	LOC_Os01g19894
Deletion	Chr4	12022001	12194000	171999	23
Deletion	Chr5	12858051	12858052	1
Deletion	Chr12	12970755	12970756	1
Deletion	Chr2	15534601	15534602	1
Deletion	Chr10	16716813	16716815	2
Deletion	Chr9	17010685	17010686	1	LOC_Os09g28019
Deletion	Chr5	19316291	19316301	10
Deletion	Chr3	19972476	19972483	7	LOC_Os03g36000
Deletion	Chr3	20908385	20908394	9
Deletion	Chr3	23838625	23838626	1
Deletion	Chr5	24889027	24889035	8
Deletion	Chr4	25613416	25613417	1	LOC_Os04g43300
Deletion	Chr2	27602678	27602680	2	LOC_Os02g45390
Deletion	Chr4	28635899	28635901	2
Deletion	Chr2	29717198	29717211	13
Deletion	Chr4	31374804	31374815	11

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	29894349	29894350	2
Insertion	Chr5	12473144	12473144	1
Insertion	Chr5	29939605	29939611	7

No Inversion

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	401914	Chr5	2598286	2
Translocation	Chr7	402013	Chr5	29669948
Translocation	Chr7	494264	Chr3	4692516
Translocation	Chr4	4513159	Chr3	32812169	LOC_Os04g08410
Translocation	Chr4	4513442	Chr3	32812170	LOC_Os04g08410
Translocation	Chr12	12597903	Chr8	1628647	2
Translocation	Chr11	13162204	Chr5	2615553	2
Translocation	Chr11	13162211	Chr5	2598287	2

Main menu