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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1883794	C-T	HET
SBS	Chr10	22905633	G-T	Homo
SBS	Chr11	18978760	G-C	HET
SBS	Chr11	25791050	G-A	HET
SBS	Chr11	28469086	T-C	HET
SBS	Chr12	11525522	G-A	Homo
SBS	Chr12	22751166	T-A	Homo
SBS	Chr12	22751167	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g37130
SBS	Chr12	27446979	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g44280
SBS	Chr2	19517941	C-T	HET
SBS	Chr2	24699440	T-C	Homo
SBS	Chr2	32414506	A-T	HET
SBS	Chr2	34973386	T-A	HET
SBS	Chr2	34973387	C-A	HET
SBS	Chr3	13426424	C-T	HET
SBS	Chr3	20548271	G-A	HET
SBS	Chr3	4217108	C-T	Homo
SBS	Chr4	16897990	C-G	Homo
SBS	Chr4	1923194	C-T	HET	STOP_GAINED	LOC_Os04g04150
SBS	Chr4	1923195	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04150
SBS	Chr4	34770250	G-T	HET
SBS	Chr5	15468356	C-T	HET
SBS	Chr5	15921740	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27390
SBS	Chr5	17393812	C-T	HET
SBS	Chr5	3215983	T-C	HET
SBS	Chr6	10146362	C-T	Homo
SBS	Chr7	29652660	T-C	Homo
SBS	Chr8	1618445	A-T	Homo
SBS	Chr8	6595317	T-C	HET
SBS	Chr9	17634442	G-T	HET
SBS	Chr9	2545841	G-A	Homo

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	5173814	5173815	1
Deletion	Chr5	15402001	15465000	62999	14
Deletion	Chr8	21149373	21149375	2
Deletion	Chr2	23401450	23401451	1
Deletion	Chr5	24243471	24243506	35
Deletion	Chr2	27579880	27579888	8	LOC_Os02g45370
Deletion	Chr5	29032902	29032908	6
Deletion	Chr1	36608696	36608707	11
Deletion	Chr1	41040001	41150000	109999	19

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27234683	27234684	2
Insertion	Chr11	27830603	27830606	4
Insertion	Chr4	7871545	7871552	8
Insertion	Chr7	24064612	24064613	2
Insertion	Chr7	6431611	6431616	6	LOC_Os07g11640

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5701561	5755487	2
Inversion	Chr4	33769310	33831912	2
Inversion	Chr4	33771898	33831913	2

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4989751	Chr9	4185124
Translocation	Chr7	5701566	Chr6	15568245
Translocation	Chr7	5755494	Chr6	15565445	2
Translocation	Chr10	8097561	Chr1	16931748
Translocation	Chr9	9571485	Chr1	31283434	LOC_Os09g15680
Translocation	Chr9	9571680	Chr1	31283438
Translocation	Chr11	10852107	Chr3	34572106	LOC_Os11g19030
Translocation	Chr11	10852112	Chr3	34572262	LOC_Os11g19030
Translocation	Chr10	22453834	Chr8	19268753	LOC_Os10g41710
Translocation	Chr5	25539246	Chr1	40624417
Translocation	Chr4	33769319	Chr3	34755994	LOC_Os04g56630
Translocation	Chr4	33771896	Chr3	34755457	LOC_Os04g56630

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