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Mutant Information

Mutant Name	FN2421 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2421 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3952856	C-T	HET
SBS	Chr1	7112265	C-G	HET
SBS	Chr1	9367606	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g16500
SBS	Chr1	9367607	G-T	Homo
SBS	Chr1	9438879	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g16630
SBS	Chr1	9438880	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g16630
SBS	Chr1	9486205	C-T	Homo
SBS	Chr1	9791097	A-T	Homo
SBS	Chr1	9791098	A-T	Homo
SBS	Chr1	18845021	C-T	HET
SBS	Chr1	22292391	G-C	HET
SBS	Chr1	41174154	G-A	HET
SBS	Chr2	4507265	G-A	HET
SBS	Chr2	12429016	G-C	Homo
SBS	Chr2	29577262	T-G	HET
SBS	Chr3	1699260	T-A	Homo
SBS	Chr3	4568876	A-T	Homo
SBS	Chr3	10075635	C-T	HET
SBS	Chr3	14796440	C-T	HET
SBS	Chr3	19803203	C-T	HET	STOP_GAINED	LOC_Os03g35740
SBS	Chr3	23649648	G-A	HET	STOP_GAINED	LOC_Os03g42510
SBS	Chr4	4234807	G-A	HET
SBS	Chr4	7770999	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13920
SBS	Chr4	8239707	T-C	HET
SBS	Chr4	9839635	T-A	HET
SBS	Chr4	14066034	G-T	HET
SBS	Chr4	14347052	A-T	HET
SBS	Chr4	20490112	G-A	HET
SBS	Chr4	34614405	C-T	HET
SBS	Chr5	7708015	T-A	HET
SBS	Chr5	19827671	A-T	HET
SBS	Chr5	23284232	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g39660
SBS	Chr6	24868963	T-C	HET
SBS	Chr7	1562877	G-A	HET
SBS	Chr7	8294843	G-A	HET
SBS	Chr7	15322231	A-C	HET
SBS	Chr8	9362341	G-A	Homo
SBS	Chr8	21533062	T-C	Homo
SBS	Chr8	28160301	T-C	Homo
SBS	Chr9	6162984	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11110
SBS	Chr9	6162985	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11110
SBS	Chr9	6783725	A-G	HET
SBS	Chr9	7789695	A-G	HET
SBS	Chr9	20604516	C-A	HET
SBS	Chr9	21148460	G-T	HET
SBS	Chr9	21148461	G-T	HET
SBS	Chr10	10742655	A-G	HET
SBS	Chr10	14428363	A-G	Homo
SBS	Chr11	1255422	C-T	Homo
SBS	Chr11	11336368	C-T	HET
SBS	Chr12	13549602	G-A	HET
SBS	Chr12	14259175	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24870
SBS	Chr12	19271921	T-A	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	497001	603000	105999	22
Deletion	Chr6	1647733	1647739	6
Deletion	Chr3	4595442	4595463	21
Deletion	Chr1	9460756	9460757	1
Deletion	Chr1	9462257	9462273	16
Deletion	Chr6	9557127	9557143	16
Deletion	Chr5	12161634	12161641	7
Deletion	Chr11	17665317	17665319	2
Deletion	Chr8	17848610	17848622	12
Deletion	Chr2	20487499	20487501	2
Deletion	Chr2	20697209	20697211	2
Deletion	Chr9	21093001	21152000	58999	10
Deletion	Chr5	21289060	21289061	1	LOC_Os05g35890
Deletion	Chr4	22991001	23018000	26999	3
Deletion	Chr3	28918139	28918141	2
Deletion	Chr2	33169858	33169865	7
Deletion	Chr2	34588336	34588344	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	8337667	8337727	61
Insertion	Chr12	22349029	22349029	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7891497	8431147
Inversion	Chr2	7906242	8434776	2
Inversion	Chr2	8416540	8434774	2
Inversion	Chr2	8430938	8431160
Inversion	Chr4	22769697	23031547
Inversion	Chr4	22886108	23031545
Inversion	Chr1	28536458	28566647	2
Inversion	Chr1	28536460	28566648	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	602882	Chr3	3197194	LOC_Os12g02030
Translocation	Chr12	603191	Chr3	3197187	LOC_Os12g02030
Translocation	Chr7	2744857	Chr4	35498044
Translocation	Chr12	3185490	Chr2	19504469
Translocation	Chr12	3185498	Chr2	19507554
Translocation	Chr7	6386906	Chr6	22634227
Translocation	Chr11	15243042	Chr6	23770679
Translocation	Chr4	17076620	Chr2	8417119	2
Translocation	Chr4	17076652	Chr2	8416545

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