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| Mutant Information |
|---|
| Mutant Name | FN2422 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2422 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16694151 | C-T | Homo | ||
| SBS | Chr1 | 32602655 | C-T | Homo | ||
| SBS | Chr10 | 19108009 | G-A | Homo | ||
| SBS | Chr10 | 4232785 | C-T | HET | ||
| SBS | Chr10 | 4934277 | C-A | HET | ||
| SBS | Chr11 | 12622635 | C-T | HET | ||
| SBS | Chr11 | 16698404 | A-G | HET | ||
| SBS | Chr11 | 8337668 | T-A | HET | ||
| SBS | Chr12 | 399222 | C-A | Homo | ||
| SBS | Chr12 | 4310504 | G-A | Homo | ||
| SBS | Chr2 | 10072731 | A-G | Homo | ||
| SBS | Chr2 | 13007584 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g21880 |
| SBS | Chr2 | 18010513 | G-T | Homo | ||
| SBS | Chr2 | 21796548 | G-A | HET | ||
| SBS | Chr3 | 15822283 | C-T | Homo | ||
| SBS | Chr3 | 22853005 | A-G | Homo | ||
| SBS | Chr3 | 32418914 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g56920 |
| SBS | Chr4 | 26217189 | C-T | Homo | ||
| SBS | Chr4 | 27532356 | G-A | Homo | ||
| SBS | Chr4 | 815838 | T-C | HET | ||
| SBS | Chr5 | 11913717 | A-T | Homo | ||
| SBS | Chr5 | 18418784 | T-C | HET | ||
| SBS | Chr5 | 4844893 | G-A | HET | ||
| SBS | Chr6 | 29979040 | A-T | Homo | ||
| SBS | Chr6 | 6813903 | C-T | HET | ||
| SBS | Chr7 | 20777070 | A-G | Homo | ||
| SBS | Chr7 | 20780517 | T-A | Homo | ||
| SBS | Chr7 | 26833401 | T-A | Homo | ||
| SBS | Chr7 | 4022630 | C-T | HET | ||
| SBS | Chr8 | 19179681 | T-C | Homo | ||
| SBS | Chr8 | 26125055 | C-A | HET | STOP_GAINED | LOC_Os08g41350 |
| SBS | Chr8 | 28077847 | T-A | Homo | ||
| SBS | Chr8 | 28077848 | C-A | Homo | ||
| SBS | Chr9 | 1953700 | C-T | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3372064 | 3372067 | 3 | |
| Deletion | Chr7 | 3599001 | 3697000 | 97999 | 14 |
| Deletion | Chr1 | 8466096 | 8466103 | 7 | |
| Deletion | Chr3 | 9344117 | 9344118 | 1 | |
| Deletion | Chr11 | 10104977 | 10104981 | 4 | |
| Deletion | Chr2 | 10751459 | 10751460 | 1 | |
| Deletion | Chr11 | 12563054 | 12563056 | 2 | |
| Deletion | Chr8 | 16587470 | 16587473 | 3 | LOC_Os08g27160 |
| Deletion | Chr4 | 18722722 | 18722728 | 6 | |
| Deletion | Chr4 | 20273719 | 20273744 | 25 | |
| Deletion | Chr8 | 21900444 | 21900450 | 6 | |
| Deletion | Chr6 | 22096515 | 22096528 | 13 | |
| Deletion | Chr2 | 26239410 | 26239419 | 9 | |
| Deletion | Chr5 | 29604012 | 29604013 | 1 | |
| Deletion | Chr6 | 30119429 | 30119436 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 10252013 | 10252014 | 2 | |
| Insertion | Chr2 | 29911017 | 29911021 | 5 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 1414426 | 2317923 | LOC_Os06g03640 |
| Inversion | Chr7 | 24743734 | 25323352 | 2 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 9803838 | Chr6 | 9802277 | |
| Translocation | Chr10 | 12873003 | Chr3 | 582092 | LOC_Os10g25010 |
| Translocation | Chr11 | 22572003 | Chr7 | 4765535 | LOC_Os11g38050 |
| Translocation | Chr6 | 23340156 | Chr4 | 16054637 | |
| Translocation | Chr3 | 25863240 | Chr2 | 16083922 | |
| Translocation | Chr4 | 27473544 | Chr3 | 13639112 | |
| Translocation | Chr7 | 29697622 | Chr6 | 31247554 |