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| Mutant Information |
|---|
| Mutant Name | FN2424 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2424 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25838479 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g45520 |
| SBS | Chr1 | 40505371 | C-T | HET | ||
| SBS | Chr1 | 40789438 | G-A | HET | ||
| SBS | Chr1 | 7108315 | C-A | HET | ||
| SBS | Chr1 | 7761555 | T-A | Homo | ||
| SBS | Chr10 | 11523630 | T-C | HET | ||
| SBS | Chr10 | 1331737 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g03150 |
| SBS | Chr11 | 13319468 | C-T | Homo | ||
| SBS | Chr11 | 9865027 | T-C | HET | ||
| SBS | Chr3 | 14224218 | C-T | HET | ||
| SBS | Chr3 | 28749529 | G-A | HET | ||
| SBS | Chr3 | 34377330 | T-C | Homo | ||
| SBS | Chr4 | 6015837 | C-T | HET | ||
| SBS | Chr5 | 21021815 | G-A | Homo | ||
| SBS | Chr5 | 5312676 | T-A | HET | ||
| SBS | Chr6 | 14913720 | G-T | HET | ||
| SBS | Chr6 | 5295364 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g10300 |
| SBS | Chr6 | 9283275 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g16290 |
| SBS | Chr6 | 9448738 | T-A | Homo | ||
| SBS | Chr7 | 14992114 | T-A | HET | ||
| SBS | Chr7 | 4580368 | C-A | HET | ||
| SBS | Chr7 | 7455833 | G-A | HET | ||
| SBS | Chr8 | 26824906 | T-C | HET | ||
| SBS | Chr9 | 13456764 | C-T | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2263411 | 2263413 | 2 | |
| Deletion | Chr1 | 8244282 | 8244292 | 10 | |
| Deletion | Chr3 | 14000300 | 14000301 | 1 | |
| Deletion | Chr12 | 16216001 | 16269000 | 52999 | 10 |
| Deletion | Chr12 | 16273001 | 16353000 | 79999 | 9 |
| Deletion | Chr12 | 16357001 | 16473000 | 115999 | 21 |
| Deletion | Chr12 | 16444986 | 16444987 | 1 | |
| Deletion | Chr12 | 16479001 | 16495000 | 15999 | 2 |
| Deletion | Chr12 | 16498001 | 16600000 | 101999 | 13 |
| Deletion | Chr12 | 16654001 | 16795000 | 140999 | 20 |
| Deletion | Chr2 | 18409751 | 18409753 | 2 | |
| Deletion | Chr11 | 23286199 | 23286200 | 1 | |
| Deletion | Chr7 | 25463561 | 25463563 | 2 | |
| Deletion | Chr8 | 26260622 | 26260623 | 1 | LOC_Os08g41570 |
| Deletion | Chr1 | 26338181 | 26338182 | 1 | |
| Deletion | Chr2 | 35302447 | 35302451 | 4 | |
| Deletion | Chr1 | 40630872 | 40630874 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 19738597 | 19738597 | 1 | |
| Insertion | Chr12 | 21964312 | 21964312 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 18918818 | 19026697 | LOC_Os03g33060 |
| Inversion | Chr9 | 21166018 | 21383991 | LOC_Os09g36700 |
| Inversion | Chr9 | 21219959 | 21383983 | LOC_Os09g36770 |
| Inversion | Chr6 | 28765877 | 29086252 | 2 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4572933 | Chr2 | 33279304 | LOC_Os10g08420 |
| Translocation | Chr11 | 17538825 | Chr2 | 21868990 | 2 |
| Translocation | Chr3 | 19026550 | Chr1 | 39621225 | 2 |
| Translocation | Chr3 | 19026688 | Chr1 | 39621219 | 2 |
| Translocation | Chr9 | 21166005 | Chr3 | 1883063 | 2 |
| Translocation | Chr9 | 21219988 | Chr3 | 1883083 | 2 |