Search Results
| Mutant Information |
|---|
| Mutant Name | FN2430 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2430 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 225777 | A-T | HET | ||
| SBS | Chr1 | 15735321 | C-T | Homo | ||
| SBS | Chr1 | 20267343 | A-T | HET | ||
| SBS | Chr1 | 26518138 | T-A | HET | ||
| SBS | Chr1 | 31200443 | A-T | HET | ||
| SBS | Chr1 | 33233461 | A-G | HET | ||
| SBS | Chr1 | 33845003 | T-C | HET | ||
| SBS | Chr2 | 3591151 | C-T | HET | ||
| SBS | Chr2 | 4267803 | A-G | HET | ||
| SBS | Chr2 | 14766270 | A-G | HET | ||
| SBS | Chr3 | 13152409 | T-G | HET | ||
| SBS | Chr3 | 17178887 | T-A | HET | ||
| SBS | Chr3 | 20705867 | C-A | HET | ||
| SBS | Chr3 | 20713411 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g37377 |
| SBS | Chr3 | 28520441 | C-A | HET | ||
| SBS | Chr3 | 30317335 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g52860 |
| SBS | Chr4 | 3300431 | G-A | Homo | ||
| SBS | Chr4 | 8262082 | G-A | HET | ||
| SBS | Chr4 | 8292722 | G-A | Homo | ||
| SBS | Chr4 | 12571863 | C-T | HET | ||
| SBS | Chr4 | 22129540 | T-A | Homo | ||
| SBS | Chr4 | 24367900 | A-G | HET | ||
| SBS | Chr4 | 30775822 | C-A | HET | ||
| SBS | Chr5 | 3565801 | A-G | HET | ||
| SBS | Chr5 | 8600606 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g15160 |
| SBS | Chr5 | 28703226 | G-A | Homo | ||
| SBS | Chr6 | 198773 | C-T | HET | ||
| SBS | Chr6 | 8705412 | C-T | Homo | ||
| SBS | Chr6 | 17891730 | G-T | Homo | ||
| SBS | Chr6 | 23885158 | G-A | HET | ||
| SBS | Chr7 | 16775587 | C-T | Homo | ||
| SBS | Chr8 | 21825065 | G-A | HET | ||
| SBS | Chr9 | 4571837 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g08700 |
| SBS | Chr9 | 20792149 | G-A | HET | ||
| SBS | Chr12 | 4346089 | G-A | HET | ||
| SBS | Chr12 | 14169196 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24710 |
| SBS | Chr12 | 26553517 | G-T | Homo | ||
| SBS | Chr12 | 26553518 | C-T | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1459767 | 1459772 | 5 | |
| Deletion | Chr5 | 4581538 | 4581539 | 1 | |
| Deletion | Chr11 | 5371540 | 5371547 | 7 | |
| Deletion | Chr5 | 9230848 | 9230853 | 5 | |
| Deletion | Chr10 | 10053819 | 10053823 | 4 | |
| Deletion | Chr4 | 10222683 | 10222686 | 3 | LOC_Os04g18490 |
| Deletion | Chr11 | 18465323 | 18465324 | 1 | LOC_Os11g31590 |
| Deletion | Chr9 | 20636714 | 20636723 | 9 | |
| Deletion | Chr7 | 24930686 | 24930687 | 1 | |
| Deletion | Chr7 | 28645804 | 28645813 | 9 | |
| Deletion | Chr7 | 28814724 | 28814726 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 3558255 | 3558256 | 2 | |
| Insertion | Chr4 | 9327943 | 9327943 | 1 | LOC_Os04g17030 |
| Insertion | Chr5 | 7182572 | 7182572 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 7842797 | Chr1 | 15630100 | 2 |
| Translocation | Chr5 | 9870526 | Chr4 | 15936402 | |
| Translocation | Chr12 | 11274352 | Chr7 | 8261490 | LOC_Os12g19381 |
| Translocation | Chr6 | 22189360 | Chr4 | 24563559 | 2 |