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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30004291	C-G	Homo
SBS	Chr1	32034041	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g55600
SBS	Chr1	37435078	G-C	Homo
SBS	Chr1	37435139	G-A	Homo
SBS	Chr1	40648988	G-A	HET
SBS	Chr1	40648989	A-T	HET
SBS	Chr10	6514478	C-A	Homo
SBS	Chr11	11477660	G-A	Homo
SBS	Chr11	18100105	A-T	HET
SBS	Chr11	23768054	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39870
SBS	Chr11	9457003	T-C	HET
SBS	Chr12	10271759	G-T	Homo
SBS	Chr12	12170963	A-T	Homo
SBS	Chr12	15523470	T-G	HET
SBS	Chr12	9304739	T-A	HET
SBS	Chr2	26847368	C-T	HET
SBS	Chr2	32764606	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr3	1663844	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03720
SBS	Chr3	16994342	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g29810
SBS	Chr3	32529246	A-G	HET
SBS	Chr3	492014	T-C	HET
SBS	Chr4	30852910	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51970
SBS	Chr4	3548229	A-T	HET
SBS	Chr5	14971365	C-A	HET
SBS	Chr5	26137852	C-T	Homo	STOP_GAINED	LOC_Os05g44960
SBS	Chr5	3228992	T-A	Homo
SBS	Chr8	17038759	C-G	HET
SBS	Chr8	22681457	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35970
SBS	Chr8	22681458	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35970
SBS	Chr8	6967420	C-T	HET
SBS	Chr9	14756658	G-A	HET
SBS	Chr9	5495450	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1387701	1387711	10
Deletion	Chr8	2434259	2434268	9
Deletion	Chr8	4733559	4733579	20
Deletion	Chr2	9037203	9037204	1
Deletion	Chr12	11098001	11277000	178999	24
Deletion	Chr12	11302001	11331000	28999	4
Deletion	Chr5	14290285	14290286	1
Deletion	Chr12	17996187	17996188	1	LOC_Os12g30050
Deletion	Chr1	29332809	29332810	1	LOC_Os01g51060
Deletion	Chr1	31401001	31466000	64999	10
Deletion	Chr1	34930694	34930695	1
Deletion	Chr4	35074674	35074677	3
Deletion	Chr1	39337527	39337538	11	LOC_Os01g67690

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	9913364	9913364	1
Insertion	Chr12	23760671	23760742	72
Insertion	Chr2	1206879	1206880	2
Insertion	Chr2	32240831	32240834	4
Insertion	Chr3	7180630	7180635	6
Insertion	Chr4	18164588	18164588	1
Insertion	Chr5	12367664	12367666	3	LOC_Os05g21020
Insertion	Chr5	20345564	20345594	31
Insertion	Chr6	29396167	29396168	2
Insertion	Chr7	18889109	18889109	1
Insertion	Chr9	15428300	15428301	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13460189	13548308
Inversion	Chr1	31403219	31638320	2
Inversion	Chr1	31638333	31740736	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1315452	Chr6	2848433
Translocation	Chr8	1315510	Chr6	2835715	2
Translocation	Chr6	2835712	Chr2	7532250	LOC_Os06g06120
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr7	8964219	Chr2	24244989
Translocation	Chr11	13434998	Chr2	8032395
Translocation	Chr8	16788590	Chr2	14478920
Translocation	Chr11	21580987	Chr9	8955216
Translocation	Chr7	23408516	Chr1	22100644	LOC_Os07g39040
Translocation	Chr3	29762040	Chr1	9051541

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