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Mutant Information

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10982356	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g19410
SBS	Chr1	13419978	A-T	HET
SBS	Chr1	15793169	T-G	HET
SBS	Chr1	28531129	C-T	HET
SBS	Chr1	29542577	G-A	Homo
SBS	Chr1	31612603	T-A	Homo
SBS	Chr1	31612604	C-G	Homo
SBS	Chr1	9297352	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16370
SBS	Chr10	1147250	G-T	Homo	STOP_GAINED	LOC_Os10g02850
SBS	Chr10	1147251	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g02850
SBS	Chr11	14860510	T-A	Homo
SBS	Chr11	4690950	C-A	HET
SBS	Chr12	4750053	T-C	Homo
SBS	Chr2	11693229	A-G	HET
SBS	Chr2	16453338	C-T	HET
SBS	Chr2	23358219	G-A	HET
SBS	Chr2	23686398	G-A	HET
SBS	Chr2	4958334	G-A	HET
SBS	Chr3	11238607	C-T	HET
SBS	Chr3	31937612	C-T	HET
SBS	Chr3	6757136	C-A	Homo
SBS	Chr4	14694635	G-A	Homo
SBS	Chr4	15217917	A-G	Homo
SBS	Chr4	25520028	T-G	HET
SBS	Chr4	27620253	A-G	HET
SBS	Chr5	1022916	A-G	Homo
SBS	Chr5	12003711	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20450
SBS	Chr5	15375288	T-C	Homo
SBS	Chr5	9669943	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16960
SBS	Chr6	29351473	T-A	HET
SBS	Chr6	31028705	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g51260
SBS	Chr7	664386	T-A	HET
SBS	Chr7	6966646	G-C	HET
SBS	Chr7	9925952	C-T	HET
SBS	Chr8	11064232	C-A	HET
SBS	Chr8	1970037	C-T	HET
SBS	Chr8	25996438	C-T	Homo
SBS	Chr8	772841	C-T	HET
SBS	Chr8	9778609	C-A	HET
SBS	Chr9	11730700	C-A	HET
SBS	Chr9	22214865	G-A	HET
SBS	Chr9	4364468	C-T	HET
SBS	Chr9	4364472	C-T	HET
SBS	Chr9	4364473	C-T	HET
SBS	Chr9	9285899	T-A	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2978031	2978037	6	LOC_Os08g05570
Deletion	Chr1	3363123	3363124	1	LOC_Os01g07140
Deletion	Chr6	5840001	5850000	9999	2
Deletion	Chr6	8666950	8666956	6
Deletion	Chr11	9694579	9694580	1
Deletion	Chr12	14553097	14553098	1
Deletion	Chr9	18375503	18375506	3
Deletion	Chr9	22223001	22576000	352999	62
Deletion	Chr9	22588001	22733000	144999	33
Deletion	Chr12	26886516	26886530	14
Deletion	Chr6	27107365	27107367	2
Deletion	Chr7	29379038	29379045	7
Deletion	Chr1	31013019	31013020	1
Deletion	Chr1	31617202	31617212	10
Deletion	Chr1	35848195	35848199	4	LOC_Os01g61930
Deletion	Chr1	41002507	41002508	1
Deletion	Chr1	41297185	41297186	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	11052243	11052244	2
Insertion	Chr8	12575994	12575994	1
Insertion	Chr8	26675066	26675066	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr9	4362917	4434258
Inversion	Chr9	4362925	4434263
Inversion	Chr1	30798541	31041424
Inversion	Chr1	30798550	31041431

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	223061	Chr4	32065612	2
Translocation	Chr10	10502892	Chr9	7055062
Translocation	Chr12	11388028	Chr3	25079488
Translocation	Chr11	13474800	Chr9	3412368	2
Translocation	Chr11	14832010	Chr10	786241	LOC_Os11g25980
Translocation	Chr12	20623427	Chr3	13645127	LOC_Os12g34094
Translocation	Chr12	20668445	Chr11	7096393	LOC_Os12g34104
Translocation	Chr9	22821460	Chr8	10066089

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