Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18896156	G-A	HET
SBS	Chr1	20810592	C-G	Homo
SBS	Chr1	22158918	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39370
SBS	Chr1	27373550	A-G	Homo
SBS	Chr10	1008677	T-A	HET
SBS	Chr10	1008678	G-T	HET
SBS	Chr12	14232524	C-T	HET
SBS	Chr12	17832057	G-A	Homo
SBS	Chr2	18491944	A-T	Homo
SBS	Chr2	19485757	G-T	Homo
SBS	Chr2	19485758	A-T	Homo
SBS	Chr2	19485761	C-T	Homo
SBS	Chr3	11434236	G-T	Homo
SBS	Chr4	11216663	C-T	HET
SBS	Chr4	1500985	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03470
SBS	Chr4	1683508	C-T	HET
SBS	Chr4	27402153	C-T	HET
SBS	Chr4	7271524	C-T	HET
SBS	Chr5	11327577	G-A	HET
SBS	Chr5	27934434	G-T	HET
SBS	Chr5	32718	T-G	Homo
SBS	Chr5	6699276	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g11780
SBS	Chr6	11557668	G-A	HET
SBS	Chr6	17436543	T-A	HET
SBS	Chr6	21601236	A-T	HET
SBS	Chr6	23640339	T-C	HET
SBS	Chr6	30943597	A-T	HET
SBS	Chr6	9353168	C-T	HET
SBS	Chr7	2454846	A-C	HET
SBS	Chr7	24652510	G-A	Homo
SBS	Chr7	6125147	G-A	HET
SBS	Chr8	23487980	A-G	Homo
SBS	Chr8	25077069	G-A	HET
SBS	Chr8	4531534	A-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2722884	2722909	25
Deletion	Chr4	7127616	7127617	1
Deletion	Chr7	7677868	7677869	1
Deletion	Chr4	7738367	7738369	2
Deletion	Chr5	12131073	12131074	1
Deletion	Chr1	12472358	12472359	1
Deletion	Chr11	12488241	12488307	66
Deletion	Chr3	16642536	16642537	1
Deletion	Chr11	18956067	18956068	1
Deletion	Chr5	20959804	20959806	2
Deletion	Chr5	22492289	22492292	3
Deletion	Chr7	24388627	24388641	14
Deletion	Chr1	34053453	34053497	44	LOC_Os01g58920

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	8162696	8162696	1
Insertion	Chr11	20601380	20601382	3	LOC_Os11g35140
Insertion	Chr2	13709743	13709743	1	LOC_Os02g23820
Insertion	Chr2	20972656	20972659	4
Insertion	Chr2	34727403	34727403	1	LOC_Os02g56640
Insertion	Chr3	22475639	22475639	1
Insertion	Chr5	9850835	9850835	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15611716	16606091
Inversion	Chr4	28980994	28989974

Translocations: 16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1875814	Chr3	21432729	2
Translocation	Chr9	4897294	Chr3	25664335
Translocation	Chr12	10043738	Chr10	2044496	2
Translocation	Chr4	11231410	Chr3	4244409
Translocation	Chr8	18074318	Chr1	18737653	2
Translocation	Chr11	18371992	Chr10	879842	LOC_Os11g31440
Translocation	Chr12	18667591	Chr7	10080107
Translocation	Chr11	19842658	Chr1	19348949
Translocation	Chr7	21453177	Chr1	15973700
Translocation	Chr11	22502182	Chr10	3012237	LOC_Os11g37950
Translocation	Chr12	22721861	Chr10	6570962
Translocation	Chr12	24881325	Chr5	14734731	2
Translocation	Chr7	25789356	Chr4	28993689
Translocation	Chr7	25789367	Chr4	28989974
Translocation	Chr7	26201279	Chr1	36918382	2
Translocation	Chr11	26258817	Chr4	6929825	LOC_Os11g43490

Main menu