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| Mutant Information |
|---|
| Mutant Name | FN2436 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2436 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12885411 | G-C | HET | ||
| SBS | Chr1 | 15782497 | C-G | Homo | ||
| SBS | Chr1 | 29023907 | C-T | Homo | ||
| SBS | Chr1 | 32362351 | T-G | HET | ||
| SBS | Chr1 | 33240585 | T-C | HET | ||
| SBS | Chr10 | 16251372 | A-C | HET | ||
| SBS | Chr10 | 21646899 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g40400 |
| SBS | Chr10 | 3438772 | C-T | HET | ||
| SBS | Chr10 | 3465975 | G-T | HET | ||
| SBS | Chr11 | 10582339 | C-G | HET | ||
| SBS | Chr11 | 11687430 | A-T | Homo | ||
| SBS | Chr11 | 14055067 | T-A | Homo | ||
| SBS | Chr11 | 14318408 | C-G | Homo | ||
| SBS | Chr11 | 17312130 | G-A | HET | ||
| SBS | Chr11 | 20921483 | G-A | HET | ||
| SBS | Chr11 | 25391171 | G-A | Homo | ||
| SBS | Chr11 | 5832180 | C-T | Homo | ||
| SBS | Chr12 | 4202527 | C-A | HET | ||
| SBS | Chr12 | 4202528 | T-A | HET | ||
| SBS | Chr2 | 9065705 | G-T | HET | ||
| SBS | Chr3 | 1377438 | C-T | Homo | ||
| SBS | Chr3 | 17924070 | T-A | HET | ||
| SBS | Chr3 | 32249801 | G-C | HET | ||
| SBS | Chr4 | 1931363 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g04160 |
| SBS | Chr4 | 3058981 | A-G | HET | ||
| SBS | Chr5 | 15822947 | G-C | HET | ||
| SBS | Chr5 | 17250879 | C-G | HET | ||
| SBS | Chr5 | 22312984 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g38060 |
| SBS | Chr5 | 24415548 | C-T | HET | ||
| SBS | Chr6 | 13570764 | C-T | HET | ||
| SBS | Chr6 | 17186426 | G-A | Homo | ||
| SBS | Chr6 | 23754529 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g39930 |
| SBS | Chr6 | 9597385 | A-T | HET | ||
| SBS | Chr7 | 27914617 | C-A | HET | ||
| SBS | Chr7 | 5110685 | C-A | Homo | ||
| SBS | Chr8 | 15004047 | A-T | Homo | ||
| SBS | Chr8 | 23681617 | C-T | HET | ||
| SBS | Chr8 | 5024654 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g08680 |
| SBS | Chr9 | 12604317 | A-T | HET | ||
| SBS | Chr9 | 5810060 | T-G | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 2269525 | 2269527 | 2 | |
| Deletion | Chr10 | 2720108 | 2720109 | 1 | |
| Deletion | Chr6 | 3548795 | 3548803 | 8 | |
| Deletion | Chr8 | 4987768 | 4987769 | 1 | LOC_Os08g08630 |
| Deletion | Chr8 | 5037929 | 5037936 | 7 | |
| Deletion | Chr7 | 5530350 | 5530362 | 12 | |
| Deletion | Chr6 | 9335580 | 9335592 | 12 | |
| Deletion | Chr8 | 9643342 | 9643343 | 1 | |
| Deletion | Chr3 | 10230919 | 10230920 | 1 | LOC_Os03g18250 |
| Deletion | Chr5 | 10860853 | 10860858 | 5 | |
| Deletion | Chr7 | 11227683 | 11227684 | 1 | |
| Deletion | Chr12 | 14268796 | 14268797 | 1 | |
| Deletion | Chr11 | 15590799 | 15590815 | 16 | |
| Deletion | Chr8 | 20622427 | 20622429 | 2 | LOC_Os08g33154 |
| Deletion | Chr8 | 26039919 | 26039925 | 6 | |
| Deletion | Chr11 | 26647957 | 26647958 | 1 | |
| Deletion | Chr8 | 26781631 | 26781632 | 1 | |
| Deletion | Chr1 | 34033893 | 34033896 | 3 | LOC_Os01g58890 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 14683996 | 14683997 | 2 | |
| Insertion | Chr1 | 27242278 | 27242279 | 2 | |
| Insertion | Chr4 | 29150317 | 29150327 | 11 | |
| Insertion | Chr9 | 8299252 | 8299252 | 1 |
No Inversion
No Translocation