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| Mutant Information |
|---|
| Mutant Name | FN2437 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2437 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1001614 | G-A | HET | ||
| SBS | Chr1 | 14248841 | A-T | HET | ||
| SBS | Chr1 | 14258709 | G-A | HET | ||
| SBS | Chr1 | 14371364 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g25402 |
| SBS | Chr1 | 18526194 | C-G | Homo | ||
| SBS | Chr1 | 22505273 | G-A | HET | ||
| SBS | Chr1 | 32570228 | A-G | Homo | ||
| SBS | Chr10 | 2419635 | G-T | HET | ||
| SBS | Chr10 | 2454326 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g05020 |
| SBS | Chr11 | 12952173 | G-T | HET | ||
| SBS | Chr11 | 18444672 | A-G | Homo | ||
| SBS | Chr11 | 18887527 | G-A | Homo | ||
| SBS | Chr12 | 12860879 | G-A | HET | ||
| SBS | Chr12 | 14212544 | G-A | HET | ||
| SBS | Chr12 | 19130420 | G-A | HET | ||
| SBS | Chr2 | 23779287 | C-A | HET | ||
| SBS | Chr2 | 30043982 | T-G | HET | ||
| SBS | Chr2 | 34234537 | G-A | HET | ||
| SBS | Chr2 | 7797949 | T-C | HET | ||
| SBS | Chr2 | 7836522 | A-T | HET | ||
| SBS | Chr3 | 16863356 | T-C | Homo | ||
| SBS | Chr3 | 17311976 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g30350 |
| SBS | Chr4 | 35029247 | G-A | HET | ||
| SBS | Chr5 | 4794713 | G-A | Homo | ||
| SBS | Chr5 | 8359780 | G-T | Homo | ||
| SBS | Chr6 | 16595957 | T-A | HET | ||
| SBS | Chr6 | 20565593 | G-A | HET | ||
| SBS | Chr6 | 24358041 | G-A | Homo | ||
| SBS | Chr6 | 26103815 | C-A | HET | ||
| SBS | Chr6 | 31136424 | T-G | HET | ||
| SBS | Chr6 | 31199284 | G-A | HET | ||
| SBS | Chr7 | 11186340 | T-C | HET | ||
| SBS | Chr8 | 1385147 | C-G | Homo | ||
| SBS | Chr8 | 17669720 | C-T | Homo | ||
| SBS | Chr9 | 22590436 | G-A | HET | ||
| SBS | Chr9 | 9932582 | G-A | Homo |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 266514 | 266530 | 16 | LOC_Os09g01320 |
| Deletion | Chr10 | 542698 | 542709 | 11 | |
| Deletion | Chr2 | 1208977 | 1208984 | 7 | |
| Deletion | Chr9 | 1639268 | 1639281 | 13 | |
| Deletion | Chr2 | 4748163 | 4748171 | 8 | LOC_Os02g09230 |
| Deletion | Chr7 | 6986901 | 6986907 | 6 | |
| Deletion | Chr11 | 7850956 | 7850960 | 4 | |
| Deletion | Chr2 | 11161869 | 11161870 | 1 | |
| Deletion | Chr12 | 11528843 | 11528846 | 3 | LOC_Os12g19780 |
| Deletion | Chr6 | 13635515 | 13635516 | 1 | |
| Deletion | Chr11 | 14305676 | 14305677 | 1 | |
| Deletion | Chr12 | 15240944 | 15240945 | 1 | |
| Deletion | Chr2 | 17584235 | 17584257 | 22 | |
| Deletion | Chr10 | 19305444 | 19305456 | 12 | |
| Deletion | Chr12 | 20196183 | 20196206 | 23 | |
| Deletion | Chr3 | 21347793 | 21347794 | 1 | |
| Deletion | Chr2 | 22191428 | 22191432 | 4 | |
| Deletion | Chr3 | 23581812 | 23581813 | 1 | |
| Deletion | Chr3 | 28925729 | 28925733 | 4 | |
| Deletion | Chr3 | 29827130 | 29827131 | 1 | |
| Deletion | Chr2 | 33613904 | 33613910 | 6 | |
| Deletion | Chr4 | 34880748 | 34880749 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 31738027 | 31738028 | 2 | |
| Insertion | Chr4 | 11128397 | 11128401 | 5 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 12749723 | 13681620 | 2 |
| Inversion | Chr8 | 12752944 | 13681630 | 2 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 1721639 | Chr1 | 27470035 | |
| Translocation | Chr9 | 5979569 | Chr2 | 18788605 | |
| Translocation | Chr7 | 17647048 | Chr6 | 22526239 |