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| Mutant Information |
|---|
| Mutant Name | FN2442 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2442 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28641388 | G-A | HET | ||
| SBS | Chr1 | 5465578 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g10380 |
| SBS | Chr1 | 6308769 | T-A | HET | ||
| SBS | Chr11 | 16439442 | C-G | Homo | ||
| SBS | Chr11 | 18132451 | C-T | HET | ||
| SBS | Chr11 | 21333958 | A-G | Homo | ||
| SBS | Chr11 | 2695504 | G-A | Homo | ||
| SBS | Chr12 | 19920407 | T-C | Homo | ||
| SBS | Chr2 | 5811572 | G-T | HET | ||
| SBS | Chr2 | 9443148 | A-G | HET | ||
| SBS | Chr3 | 20003425 | G-A | HET | ||
| SBS | Chr3 | 21757317 | C-A | HET | ||
| SBS | Chr3 | 29419488 | C-A | HET | ||
| SBS | Chr3 | 29454151 | A-G | HET | ||
| SBS | Chr4 | 20940037 | C-A | HET | ||
| SBS | Chr4 | 22529249 | G-T | HET | ||
| SBS | Chr4 | 26759725 | T-C | HET | ||
| SBS | Chr5 | 15190698 | T-C | HET | ||
| SBS | Chr5 | 1733103 | C-T | Homo | ||
| SBS | Chr5 | 28502414 | T-A | HET | ||
| SBS | Chr5 | 28714795 | A-T | HET | ||
| SBS | Chr5 | 4617350 | A-T | HET | ||
| SBS | Chr6 | 11095888 | T-G | HET | ||
| SBS | Chr6 | 16192861 | T-C | Homo | ||
| SBS | Chr6 | 2198504 | A-T | HET | ||
| SBS | Chr6 | 27627678 | C-A | HET | ||
| SBS | Chr6 | 6896498 | C-G | HET | ||
| SBS | Chr7 | 19317109 | A-G | HET | ||
| SBS | Chr8 | 14242773 | G-T | Homo | ||
| SBS | Chr8 | 16090060 | C-T | HET | ||
| SBS | Chr8 | 18750945 | T-G | HET | ||
| SBS | Chr8 | 18799821 | C-T | HET | ||
| SBS | Chr8 | 1923776 | T-A | HET | ||
| SBS | Chr8 | 1923777 | C-A | HET | ||
| SBS | Chr9 | 14974403 | T-C | HET | ||
| SBS | Chr9 | 18603284 | C-G | Homo | ||
| SBS | Chr9 | 18677332 | T-C | Homo | ||
| SBS | Chr9 | 21736564 | T-C | HET | ||
| SBS | Chr9 | 21820762 | G-A | HET |
Deletions: 9
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 1213455 | 1213460 | 6 | |
| Insertion | Chr10 | 7045053 | 7045053 | 1 | |
| Insertion | Chr12 | 17189074 | 17189074 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 2289840 | 2291259 | LOC_Os12g05180 |
| Inversion | Chr12 | 2289842 | 2291263 | LOC_Os12g05180 |
| Inversion | Chr6 | 7413048 | 7464839 | |
| Inversion | Chr6 | 7413063 | 7464956 | |
| Inversion | Chr12 | 8719637 | 9279250 | 2 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 9279243 | Chr7 | 4696365 | LOC_Os12g16220 |
| Translocation | Chr9 | 9372577 | Chr7 | 4204596 | |
| Translocation | Chr10 | 10473076 | Chr1 | 18784334 | |
| Translocation | Chr7 | 10853905 | Chr3 | 16447024 | |
| Translocation | Chr8 | 13617468 | Chr7 | 4362906 | |
| Translocation | Chr8 | 13617817 | Chr7 | 4362892 | |
| Translocation | Chr8 | 27842868 | Chr1 | 31320112 | LOC_Os08g44230 |
| Translocation | Chr8 | 27859955 | Chr1 | 31320109 | LOC_Os08g44260 |