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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19800366	G-A	HET
SBS	Chr1	30192682	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g52550
SBS	Chr1	38171172	C-T	HET
SBS	Chr1	39073520	C-T	HET
SBS	Chr1	43083800	G-T	HET
SBS	Chr10	1639590	G-A	HET
SBS	Chr10	16684518	A-C	HET
SBS	Chr10	20642842	G-A	HET
SBS	Chr10	21760714	C-T	Homo
SBS	Chr10	3443391	G-T	Homo
SBS	Chr11	11750731	A-G	HET
SBS	Chr11	14594598	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g25590
SBS	Chr11	288721	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g01490
SBS	Chr11	9261154	G-A	Homo	STOP_GAINED	LOC_Os11g16710
SBS	Chr12	15369050	T-G	HET
SBS	Chr12	23768261	T-A	HET
SBS	Chr12	24241073	A-G	Homo
SBS	Chr12	2744689	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g05960
SBS	Chr2	2881761	C-A	HET
SBS	Chr2	3416255	T-A	HET
SBS	Chr3	11707186	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g20690
SBS	Chr3	21452263	C-T	HET
SBS	Chr4	14155898	G-A	Homo
SBS	Chr4	21095279	C-T	Homo
SBS	Chr4	21123296	A-C	HET
SBS	Chr4	2128677	A-T	Homo
SBS	Chr4	28067613	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47270
SBS	Chr4	9081809	G-C	Homo
SBS	Chr4	9834965	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17890
SBS	Chr5	16870662	C-T	Homo
SBS	Chr5	19643488	T-C	Homo
SBS	Chr5	26712423	A-T	HET
SBS	Chr5	4082372	C-T	HET
SBS	Chr6	17247789	T-C	HET
SBS	Chr6	25853615	C-T	Homo
SBS	Chr7	20124998	A-C	HET
SBS	Chr7	29428572	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g49130
SBS	Chr8	9190315	G-C	Homo
SBS	Chr9	4832565	G-A	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	67620	67632	12
Deletion	Chr4	3466124	3466164	40
Deletion	Chr4	3520855	3520859	4
Deletion	Chr6	4583219	4583220	1
Deletion	Chr3	9137642	9137643	1
Deletion	Chr1	11667817	11667910	93
Deletion	Chr11	18333165	18333171	6
Deletion	Chr11	20342571	20342575	4
Deletion	Chr12	20425466	20425476	10
Deletion	Chr4	21216367	21216368	1
Deletion	Chr12	21769001	21779000	9999	LOC_Os12g35760
Deletion	Chr12	22455923	22455929	6
Deletion	Chr7	23876870	23876878	8
Deletion	Chr2	29465202	29465212	10	LOC_Os02g48122
Deletion	Chr1	36149253	36149255	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	13040938	13040944	7
Insertion	Chr11	14263808	14263813	6
Insertion	Chr2	14203730	14203730	1
Insertion	Chr8	13486000	13486001	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	687614	910725
Inversion	Chr6	687618	910735
Inversion	Chr1	2612313	2691315	2
Inversion	Chr1	2612323	2691331	2
Inversion	Chr3	25358358	25395436	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1776236	Chr4	27416657	LOC_Os11g04290
Translocation	Chr11	4272834	Chr9	3387622	2
Translocation	Chr12	6576641	Chr4	27416476	2
Translocation	Chr11	7841995	Chr4	17430474	2
Translocation	Chr10	12236290	Chr8	8865996	2
Translocation	Chr6	14459816	Chr4	8661887	2

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