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Mutant Information |
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Mutant Name | FN2450 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2450 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 30921626 | G-T | HET | ||
SBS | Chr1 | 33090237 | C-T | Homo | ||
SBS | Chr1 | 34872865 | G-A | HET | ||
SBS | Chr1 | 39151345 | T-C | HET | ||
SBS | Chr1 | 4694462 | G-T | HET | ||
SBS | Chr11 | 18441046 | T-C | HET | ||
SBS | Chr11 | 23289698 | A-T | HET | ||
SBS | Chr11 | 5658758 | A-T | HET | ||
SBS | Chr11 | 8806297 | G-C | HET | ||
SBS | Chr12 | 12489425 | C-G | HET | ||
SBS | Chr12 | 4087939 | G-A | HET | ||
SBS | Chr2 | 13093780 | C-T | HET | ||
SBS | Chr2 | 13357567 | G-T | Homo | ||
SBS | Chr2 | 32363250 | G-T | HET | ||
SBS | Chr3 | 12356585 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g21640 |
SBS | Chr3 | 12776951 | G-A | HET | ||
SBS | Chr3 | 16778182 | G-T | HET | ||
SBS | Chr3 | 28125998 | G-T | HET | ||
SBS | Chr3 | 35902618 | C-G | HET | ||
SBS | Chr4 | 11890299 | T-C | HET | ||
SBS | Chr4 | 19519570 | G-A | HET | ||
SBS | Chr4 | 20350571 | G-A | HET | ||
SBS | Chr4 | 3398911 | G-A | HET | ||
SBS | Chr4 | 5780962 | T-C | HET | ||
SBS | Chr4 | 6699927 | A-T | HET | ||
SBS | Chr5 | 3131884 | A-T | HET | ||
SBS | Chr5 | 8964059 | T-C | HET | ||
SBS | Chr6 | 11008621 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g19350 |
SBS | Chr6 | 4542015 | G-C | HET | ||
SBS | Chr7 | 14072398 | G-T | HET | ||
SBS | Chr7 | 9640857 | G-A | Homo | ||
SBS | Chr9 | 21089180 | C-T | HET |
Deletions: 7
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 6159278 | 6159290 | 12 | |
Deletion | Chr1 | 9513536 | 9513541 | 5 | LOC_Os01g16750 |
Deletion | Chr7 | 10293366 | 10293368 | 2 | |
Deletion | Chr2 | 24538612 | 24538625 | 13 | |
Deletion | Chr8 | 25753027 | 25753029 | 2 | LOC_Os08g40670 |
Deletion | Chr7 | 29086688 | 29086689 | 1 | |
Deletion | Chr1 | 39558596 | 39558597 | 1 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 17005033 | 17005033 | 1 | |
Insertion | Chr3 | 21463072 | 21463073 | 2 | |
Insertion | Chr8 | 13996713 | 13996722 | 10 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 27483464 | 28138206 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 4306960 | Chr6 | 25086676 | |
Translocation | Chr9 | 8226702 | Chr2 | 11631165 | |
Translocation | Chr10 | 13795124 | Chr5 | 28810796 | |
Translocation | Chr11 | 27840203 | Chr2 | 16105687 | |
Translocation | Chr3 | 31169821 | Chr1 | 41499149 |