Search Nipponbare


Mutant Information

Mutant NameFN2450 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2450 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 32
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr130921626G-THET
SBSChr133090237C-THomo
SBSChr134872865G-AHET
SBSChr139151345T-CHET
SBSChr14694462G-THET
SBSChr1118441046T-CHET
SBSChr1123289698A-THET
SBSChr115658758A-THET
SBSChr118806297G-CHET
SBSChr1212489425C-GHET
SBSChr124087939G-AHET
SBSChr213093780C-THET
SBSChr213357567G-THomo
SBSChr232363250G-THET
SBSChr312356585G-CHETNON_SYNONYMOUS_CODINGLOC_Os03g21640
SBSChr312776951G-AHET
SBSChr316778182G-THET
SBSChr328125998G-THET
SBSChr335902618C-GHET
SBSChr411890299T-CHET
SBSChr419519570G-AHET
SBSChr420350571G-AHET
SBSChr43398911G-AHET
SBSChr45780962T-CHET
SBSChr46699927A-THET
SBSChr53131884A-THET
SBSChr58964059T-CHET
SBSChr611008621T-AHomoNON_SYNONYMOUS_CODINGLOC_Os06g19350
SBSChr64542015G-CHET
SBSChr714072398G-THET
SBSChr79640857G-AHomo
SBSChr921089180C-THET

Deletions: 7
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr86159278615929012
DeletionChr1951353695135415LOC_Os01g16750
DeletionChr710293366102933682
DeletionChr2245386122453862513
DeletionChr825753027257530292LOC_Os08g40670
DeletionChr729086688290866891
DeletionChr139558596395585971

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr117005033170050331
InsertionChr321463072214630732
InsertionChr8139967131399672210

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr112748346428138206

Translocations: 5
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr84306960Chr625086676
TranslocationChr98226702Chr211631165
TranslocationChr1013795124Chr528810796
TranslocationChr1127840203Chr216105687
TranslocationChr331169821Chr141499149