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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10843041	G-T	HET
SBS	Chr1	30119820	C-A	HET
SBS	Chr1	9759087	T-C	HET
SBS	Chr10	11552349	C-T	HET
SBS	Chr11	16516210	C-T	HET
SBS	Chr12	1834684	C-T	Homo
SBS	Chr12	18713201	C-T	Homo
SBS	Chr12	23781230	G-A	HET	STOP_GAINED	LOC_Os12g38710
SBS	Chr3	13230107	G-A	Homo
SBS	Chr3	20637939	T-C	HET
SBS	Chr3	22692599	C-T	HET
SBS	Chr4	20757941	A-C	Homo
SBS	Chr5	15305393	G-A	HET
SBS	Chr5	28770111	C-T	HET
SBS	Chr5	4773789	T-A	HET
SBS	Chr6	11454825	A-G	HET
SBS	Chr6	7797539	G-C	HET
SBS	Chr7	10653862	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18000
SBS	Chr7	18410246	C-T	HET
SBS	Chr7	5761528	A-G	Homo
SBS	Chr8	11288847	G-A	HET
SBS	Chr9	10322731	G-A	HET
SBS	Chr9	10380328	G-A	HET
SBS	Chr9	10380329	T-A	HET
SBS	Chr9	14650629	T-A	HET
SBS	Chr9	19841842	A-G	HET
SBS	Chr9	20169928	G-A	HET
SBS	Chr9	3118968	C-A	HET
SBS	Chr9	5395805	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09930
SBS	Chr9	9606349	T-C	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3109144	3109158	14
Deletion	Chr5	4644353	4644354	1	LOC_Os05g08510
Deletion	Chr2	14363166	14363167	1	LOC_Os02g24760
Deletion	Chr11	14928478	14928482	4	LOC_Os11g26090
Deletion	Chr1	17198586	17198587	1
Deletion	Chr1	20425522	20425527	5	LOC_Os01g36766
Deletion	Chr7	21340787	21340794	7
Deletion	Chr11	22797536	22797561	25
Deletion	Chr11	22974001	23006000	31999	2
Deletion	Chr11	23550887	23550900	13
Deletion	Chr4	25614786	25614788	2	LOC_Os04g43300
Deletion	Chr6	26597821	26597823	2
Deletion	Chr5	27618805	27618806	1
Deletion	Chr4	32900001	32928000	27999	4
Deletion	Chr4	32909886	32909887	1
Deletion	Chr4	32934001	32963000	28999	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	27369090	27369090	1
Insertion	Chr3	7965487	7965488	2
Insertion	Chr6	26597810	26597812	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3601511	3655992	LOC_Os06g07490
Inversion	Chr6	3601517	3713359	LOC_Os06g07490
Inversion	Chr4	32450698	33127832	LOC_Os04g54564
Inversion	Chr4	32450717	33127846	LOC_Os04g54564

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4911780	Chr7	25127319
Translocation	Chr12	16182371	Chr4	32905479	2
Translocation	Chr12	18642346	Chr10	17911445
Translocation	Chr8	19194685	Chr7	9565477	2
Translocation	Chr11	20125955	Chr3	8265494	2
Translocation	Chr9	22939494	Chr4	32962882
Translocation	Chr11	22974175	Chr6	2038801	LOC_Os11g38710
Translocation	Chr11	25898149	Chr9	4534242
Translocation	Chr8	26718678	Chr3	31563890
Translocation	Chr4	32897644	Chr1	39114202
Translocation	Chr4	32897645	Chr1	22814514

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