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Mutant Information |
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Mutant Name | FN2459 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2459 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr11 | 12013347 | A-C | Homo | ||
SBS | Chr11 | 15527459 | A-T | HET | ||
SBS | Chr12 | 18358643 | T-A | Homo | ||
SBS | Chr12 | 20231996 | C-T | HET | ||
SBS | Chr12 | 4609672 | C-T | HET | ||
SBS | Chr2 | 26499034 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g43880 |
SBS | Chr2 | 3839847 | G-C | Homo | ||
SBS | Chr2 | 9985497 | T-C | Homo | ||
SBS | Chr3 | 17179964 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g30100 |
SBS | Chr3 | 26872464 | C-A | HET | STOP_GAINED | LOC_Os03g47510 |
SBS | Chr3 | 8787290 | C-A | HET | ||
SBS | Chr3 | 8787291 | G-A | HET | ||
SBS | Chr5 | 22239789 | C-A | HET | ||
SBS | Chr5 | 25839727 | T-A | Homo | ||
SBS | Chr5 | 8483081 | T-C | Homo | ||
SBS | Chr6 | 25618424 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g42600 |
SBS | Chr6 | 26238325 | A-G | HET | ||
SBS | Chr6 | 26875108 | A-T | HET | ||
SBS | Chr6 | 7710720 | T-C | Homo | ||
SBS | Chr7 | 27493110 | G-A | HET | ||
SBS | Chr7 | 7853027 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g13680 |
SBS | Chr8 | 377857 | C-T | HET |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 64116 | 64470 | 354 | |
Deletion | Chr2 | 3084877 | 3084891 | 14 | |
Deletion | Chr11 | 4204648 | 4204655 | 7 | |
Deletion | Chr1 | 5541723 | 5541726 | 3 | |
Deletion | Chr10 | 5649306 | 5649307 | 1 | |
Deletion | Chr8 | 17815516 | 17815520 | 4 | |
Deletion | Chr5 | 26459835 | 26459836 | 1 | |
Deletion | Chr5 | 28831132 | 28831141 | 9 | LOC_Os05g50300 |
Deletion | Chr11 | 28939001 | 28964000 | 24999 | 7 |
Deletion | Chr1 | 42410878 | 42410881 | 3 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 21095996 | 21095997 | 2 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 1211359 | 1703117 | |
Inversion | Chr8 | 1211362 | 1703127 | |
Inversion | Chr3 | 22949911 | 23043434 | LOC_Os03g41280 |
Inversion | Chr3 | 22949940 | 23043443 | LOC_Os03g41280 |
Translocations: 11
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 7454 | Chr1 | 43269412 | |
Translocation | Chr8 | 5063870 | Chr6 | 3022426 | |
Translocation | Chr11 | 5197569 | Chr3 | 105984 | |
Translocation | Chr9 | 6318970 | Chr1 | 1281657 | |
Translocation | Chr11 | 9528722 | Chr4 | 18658022 | 2 |
Translocation | Chr11 | 9529815 | Chr4 | 18658022 | 2 |
Translocation | Chr6 | 10379862 | Chr1 | 2481337 | LOC_Os06g17880 |
Translocation | Chr11 | 10867247 | Chr2 | 24386440 | LOC_Os11g19060 |
Translocation | Chr4 | 17832380 | Chr2 | 12837074 | |
Translocation | Chr12 | 18623060 | Chr4 | 505948 | 2 |
Translocation | Chr12 | 27344056 | Chr11 | 28939296 | 2 |