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Mutant Information

Mutant NameFN2459 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2459 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 22
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr1112013347A-CHomo
SBSChr1115527459A-THET
SBSChr1218358643T-AHomo
SBSChr1220231996C-THET
SBSChr124609672C-THET
SBSChr226499034T-CHomoNON_SYNONYMOUS_CODINGLOC_Os02g43880
SBSChr23839847G-CHomo
SBSChr29985497T-CHomo
SBSChr317179964C-THETNON_SYNONYMOUS_CODINGLOC_Os03g30100
SBSChr326872464C-AHETSTOP_GAINEDLOC_Os03g47510
SBSChr38787290C-AHET
SBSChr38787291G-AHET
SBSChr522239789C-AHET
SBSChr525839727T-AHomo
SBSChr58483081T-CHomo
SBSChr625618424G-AHETNON_SYNONYMOUS_CODINGLOC_Os06g42600
SBSChr626238325A-GHET
SBSChr626875108A-THET
SBSChr67710720T-CHomo
SBSChr727493110G-AHET
SBSChr77853027G-AHomoNON_SYNONYMOUS_CODINGLOC_Os07g13680
SBSChr8377857C-THET

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr66411664470354
DeletionChr23084877308489114
DeletionChr11420464842046557
DeletionChr1554172355417263
DeletionChr10564930656493071
DeletionChr817815516178155204
DeletionChr526459835264598361
DeletionChr528831132288311419LOC_Os05g50300
DeletionChr112893900128964000249997
DeletionChr142410878424108813

Insertions: 1
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr721095996210959972

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr812113591703117
InversionChr812113621703127
InversionChr32294991123043434LOC_Os03g41280
InversionChr32294994023043443LOC_Os03g41280

Translocations: 11
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr77454Chr143269412
TranslocationChr85063870Chr63022426
TranslocationChr115197569Chr3105984
TranslocationChr96318970Chr11281657
TranslocationChr119528722Chr4186580222
TranslocationChr119529815Chr4186580222
TranslocationChr610379862Chr12481337LOC_Os06g17880
TranslocationChr1110867247Chr224386440LOC_Os11g19060
TranslocationChr417832380Chr212837074
TranslocationChr1218623060Chr45059482
TranslocationChr1227344056Chr11289392962