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| Mutant Information |
|---|
| Mutant Name | FN2460 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2460 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7522655 | T-C | Homo | ||
| SBS | Chr10 | 14059248 | T-C | HET | ||
| SBS | Chr11 | 11974037 | C-T | HET | ||
| SBS | Chr11 | 16449377 | C-T | HET | ||
| SBS | Chr11 | 7927601 | G-A | HET | ||
| SBS | Chr12 | 478850 | G-T | Homo | ||
| SBS | Chr2 | 29662998 | G-A | HET | ||
| SBS | Chr2 | 29899066 | T-A | HET | ||
| SBS | Chr2 | 31549410 | C-T | HET | ||
| SBS | Chr2 | 32929964 | A-T | HET | ||
| SBS | Chr3 | 10308797 | T-A | Homo | ||
| SBS | Chr3 | 17510775 | G-A | HET | ||
| SBS | Chr3 | 22473199 | G-T | HET | ||
| SBS | Chr4 | 3087841 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05960 |
| SBS | Chr5 | 14606414 | G-A | HET | ||
| SBS | Chr5 | 15901512 | A-G | HET | ||
| SBS | Chr5 | 17461246 | G-A | HET | ||
| SBS | Chr5 | 29261444 | C-T | Homo | ||
| SBS | Chr5 | 4430703 | C-T | Homo | ||
| SBS | Chr6 | 4519645 | G-A | Homo | ||
| SBS | Chr7 | 16843970 | T-C | Homo | ||
| SBS | Chr7 | 28596639 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g47870 |
| SBS | Chr7 | 28807593 | G-A | HET | ||
| SBS | Chr8 | 17022176 | T-C | HET | ||
| SBS | Chr8 | 18391490 | G-C | Homo | ||
| SBS | Chr8 | 20613498 | G-T | HET | ||
| SBS | Chr8 | 2691544 | C-T | HET | ||
| SBS | Chr9 | 7980169 | G-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 698967 | 698974 | 7 | |
| Deletion | Chr7 | 2879263 | 2879265 | 2 | |
| Deletion | Chr12 | 9113715 | 9113725 | 10 | |
| Deletion | Chr12 | 9150360 | 9150367 | 7 | |
| Deletion | Chr7 | 10121759 | 10121773 | 14 | |
| Deletion | Chr3 | 10590133 | 10590135 | 2 | |
| Deletion | Chr5 | 10686298 | 10686299 | 1 | |
| Deletion | Chr9 | 13373481 | 13373482 | 1 | |
| Deletion | Chr8 | 13425069 | 13425071 | 2 | LOC_Os08g22270 |
| Deletion | Chr8 | 20272017 | 20272029 | 12 | |
| Deletion | Chr4 | 20558001 | 20583000 | 24999 | 4 |
| Deletion | Chr1 | 25375080 | 25375095 | 15 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 20536395 | 20536396 | 2 | |
| Insertion | Chr5 | 2697098 | 2697099 | 2 | |
| Insertion | Chr9 | 5748486 | 5748486 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 15001479 | 15092335 | LOC_Os02g25650 |
| Inversion | Chr2 | 15001484 | 15092348 | LOC_Os02g25650 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1241762 | Chr1 | 39841277 | |
| Translocation | Chr10 | 12306585 | Chr1 | 28356451 | LOC_Os10g24010 |
| Translocation | Chr10 | 12306787 | Chr1 | 40579247 | LOC_Os10g24010 |
| Translocation | Chr9 | 14486468 | Chr6 | 5970930 | |
| Translocation | Chr11 | 22995031 | Chr5 | 24915608 | 2 |
| Translocation | Chr4 | 34503756 | Chr2 | 11440270 | 2 |