Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12451393	G-T	HET
SBS	Chr1	14498298	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25590
SBS	Chr1	29069681	A-G	HET
SBS	Chr1	29604674	A-G	HET
SBS	Chr1	42646682	C-T	HET
SBS	Chr10	11637688	T-A	Homo
SBS	Chr10	20170324	T-C	Homo
SBS	Chr11	11933203	T-A	HET
SBS	Chr11	13845409	A-G	HET
SBS	Chr11	8617635	C-T	HET
SBS	Chr2	1876780	C-T	Homo
SBS	Chr2	31586253	C-G	HET
SBS	Chr3	25125238	G-A	Homo
SBS	Chr4	25726052	T-C	Homo
SBS	Chr4	31752415	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g53310
SBS	Chr4	31781545	G-A	HET
SBS	Chr4	4022440	G-A	Homo
SBS	Chr4	8941795	T-C	HET
SBS	Chr5	12993030	C-A	HET
SBS	Chr5	20923268	G-C	HET
SBS	Chr5	26754197	C-T	HET
SBS	Chr5	8667222	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15280
SBS	Chr6	14541278	A-G	Homo
SBS	Chr6	20621980	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g35370
SBS	Chr6	373487	C-T	HET
SBS	Chr7	28106766	T-A	HET
SBS	Chr7	3486924	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g07070
SBS	Chr8	13444213	T-A	HET
SBS	Chr8	13901367	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23080
SBS	Chr9	7935942	T-C	HET
SBS	Chr9	9316953	G-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1150021	1150023	2
Deletion	Chr1	3928001	3975000	46999	7
Deletion	Chr2	4528325	4528332	7
Deletion	Chr10	5408001	5408006	5
Deletion	Chr1	7435268	7435269	1
Deletion	Chr10	8728114	8728115	1
Deletion	Chr8	12472642	12472645	3	LOC_Os08g20770
Deletion	Chr10	12649169	12649173	4
Deletion	Chr2	13681396	13681551	155
Deletion	Chr1	15396619	15396626	7
Deletion	Chr6	15420951	15420956	5
Deletion	Chr12	17973001	17995000	21999	2
Deletion	Chr6	18125747	18125751	4
Deletion	Chr10	21160734	21160736	2
Deletion	Chr5	21828001	22167000	338999	53
Deletion	Chr8	26672339	26672341	2
Deletion	Chr4	27594280	27594281	1
Deletion	Chr5	29119411	29119412	1
Deletion	Chr3	30338001	30342000	3999	LOC_Os03g52900

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	9033670	9033670	1	LOC_Os01g16050
Insertion	Chr4	7947891	7947891	1
Insertion	Chr7	24530941	24530941	1
Insertion	Chr7	24552898	24552898	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11660544	11660943
Inversion	Chr6	14556499	14577457	LOC_Os06g24790

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4855204	Chr6	21518008	LOC_Os09g09080
Translocation	Chr10	6833663	Chr6	18384661	2
Translocation	Chr8	9749669	Chr4	7533793	2
Translocation	Chr9	10982739	Chr7	25301553	2
Translocation	Chr9	10983055	Chr7	25301291	2
Translocation	Chr11	16305873	Chr1	3928212	2
Translocation	Chr11	16305883	Chr1	3928013	2
Translocation	Chr6	21950536	Chr1	13413511
Translocation	Chr11	26331034	Chr10	20813217	2
Translocation	Chr11	28680261	Chr8	20028566
Translocation	Chr11	28752993	Chr5	27430904
Translocation	Chr11	28753002	Chr1	28104454

Main menu