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Mutant Information |
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Mutant Name | FN2494 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2494 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 40
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 28111588 | A-G | HET | ||
SBS | Chr1 | 37357775 | T-A | HET | ||
SBS | Chr1 | 42145820 | G-A | HET | ||
SBS | Chr1 | 6803079 | T-A | HET | ||
SBS | Chr10 | 19774173 | A-G | HET | ||
SBS | Chr11 | 10457090 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g18550 |
SBS | Chr11 | 10691514 | G-T | HET | ||
SBS | Chr11 | 13063908 | G-A | HET | ||
SBS | Chr11 | 17156891 | G-A | HET | ||
SBS | Chr11 | 25842936 | G-A | Homo | ||
SBS | Chr11 | 5924829 | C-G | HET | ||
SBS | Chr11 | 6455480 | G-A | HET | ||
SBS | Chr12 | 1646439 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g03960 |
SBS | Chr12 | 23403821 | C-A | HET | ||
SBS | Chr12 | 24401788 | T-G | HET | ||
SBS | Chr2 | 16148277 | C-T | HET | ||
SBS | Chr2 | 5986621 | T-A | HET | ||
SBS | Chr2 | 7195698 | C-T | HET | ||
SBS | Chr3 | 30310636 | A-C | HET | ||
SBS | Chr4 | 14521662 | G-A | HET | ||
SBS | Chr4 | 20174047 | A-G | HET | ||
SBS | Chr4 | 24618516 | T-G | HET | ||
SBS | Chr4 | 8835607 | G-A | HET | ||
SBS | Chr5 | 19871504 | C-T | HET | ||
SBS | Chr5 | 26552904 | G-A | Homo | ||
SBS | Chr5 | 4807141 | A-C | HET | ||
SBS | Chr6 | 15824964 | G-A | Homo | ||
SBS | Chr6 | 29916881 | C-A | Homo | ||
SBS | Chr6 | 6394367 | G-A | HET | ||
SBS | Chr7 | 11893903 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g20580 |
SBS | Chr7 | 11920084 | T-G | HET | ||
SBS | Chr7 | 1207407 | C-A | HET | ||
SBS | Chr7 | 1207409 | T-A | HET | ||
SBS | Chr7 | 24218747 | G-A | HET | ||
SBS | Chr7 | 2906092 | T-A | HET | ||
SBS | Chr7 | 3711826 | C-T | HET | ||
SBS | Chr8 | 12812396 | C-T | HET | ||
SBS | Chr8 | 13515049 | G-C | Homo | ||
SBS | Chr8 | 24915359 | A-G | Homo | ||
SBS | Chr8 | 8475808 | T-C | HET |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr1 | 1224883 | 1224889 | 6 | |
Deletion | Chr4 | 5548338 | 5548339 | 1 | LOC_Os04g10270 |
Deletion | Chr6 | 14330811 | 14330821 | 10 | |
Deletion | Chr6 | 15909626 | 15909647 | 21 | |
Deletion | Chr11 | 23049550 | 23049551 | 1 | |
Deletion | Chr3 | 24249964 | 24249966 | 2 | |
Deletion | Chr2 | 24720587 | 24720588 | 1 | LOC_Os02g40784 |
Deletion | Chr4 | 33093162 | 33093182 | 20 | |
Deletion | Chr4 | 33096901 | 33096912 | 11 | |
Deletion | Chr1 | 36237884 | 36237885 | 1 | LOC_Os01g62600 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 10142508 | 10142508 | 1 |
No Inversion
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 9473710 | Chr3 | 16475641 | 2 |
Translocation | Chr8 | 23631062 | Chr1 | 28110871 | 2 |
Translocation | Chr8 | 23631063 | Chr1 | 28112418 | 2 |