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Mutant Information

Mutant NameFN2494 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2494 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 40
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr128111588A-GHET
SBSChr137357775T-AHET
SBSChr142145820G-AHET
SBSChr16803079T-AHET
SBSChr1019774173A-GHET
SBSChr1110457090G-THETNON_SYNONYMOUS_CODINGLOC_Os11g18550
SBSChr1110691514G-THET
SBSChr1113063908G-AHET
SBSChr1117156891G-AHET
SBSChr1125842936G-AHomo
SBSChr115924829C-GHET
SBSChr116455480G-AHET
SBSChr121646439G-THETNON_SYNONYMOUS_CODINGLOC_Os12g03960
SBSChr1223403821C-AHET
SBSChr1224401788T-GHET
SBSChr216148277C-THET
SBSChr25986621T-AHET
SBSChr27195698C-THET
SBSChr330310636A-CHET
SBSChr414521662G-AHET
SBSChr420174047A-GHET
SBSChr424618516T-GHET
SBSChr48835607G-AHET
SBSChr519871504C-THET
SBSChr526552904G-AHomo
SBSChr54807141A-CHET
SBSChr615824964G-AHomo
SBSChr629916881C-AHomo
SBSChr66394367G-AHET
SBSChr711893903G-THETNON_SYNONYMOUS_CODINGLOC_Os07g20580
SBSChr711920084T-GHET
SBSChr71207407C-AHET
SBSChr71207409T-AHET
SBSChr724218747G-AHET
SBSChr72906092T-AHET
SBSChr73711826C-THET
SBSChr812812396C-THET
SBSChr813515049G-CHomo
SBSChr824915359A-GHomo
SBSChr88475808T-CHET

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1122488312248896
DeletionChr4554833855483391LOC_Os04g10270
DeletionChr6143308111433082110
DeletionChr6159096261590964721
DeletionChr1123049550230495511
DeletionChr324249964242499662
DeletionChr224720587247205881LOC_Os02g40784
DeletionChr4330931623309318220
DeletionChr4330969013309691211
DeletionChr136237884362378851LOC_Os01g62600

Insertions: 1
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1010142508101425081

No Inversion

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr69473710Chr3164756412
TranslocationChr823631062Chr1281108712
TranslocationChr823631063Chr1281124182