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| Mutant Information |
|---|
| Mutant Name | FN2544-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2544-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10647188 | A-G | Homo | ||
| SBS | Chr1 | 10647189 | A-G | Homo | ||
| SBS | Chr1 | 11465663 | T-C | Homo | ||
| SBS | Chr10 | 12553367 | C-A | HET | STOP_GAINED | LOC_Os10g24460 |
| SBS | Chr10 | 2012674 | C-G | HET | ||
| SBS | Chr12 | 15202784 | G-T | Homo | ||
| SBS | Chr12 | 18162372 | C-T | HET | ||
| SBS | Chr12 | 20346657 | G-A | HET | ||
| SBS | Chr12 | 6924547 | G-A | Homo | ||
| SBS | Chr2 | 1873775 | C-A | Homo | ||
| SBS | Chr2 | 20261804 | G-A | Homo | ||
| SBS | Chr2 | 25024353 | G-T | Homo | ||
| SBS | Chr2 | 33173165 | A-G | HET | ||
| SBS | Chr3 | 21391093 | A-C | Homo | ||
| SBS | Chr3 | 28216393 | C-T | Homo | ||
| SBS | Chr3 | 35026959 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g61780 |
| SBS | Chr4 | 16412181 | C-T | Homo | ||
| SBS | Chr4 | 2163939 | G-T | Homo | ||
| SBS | Chr4 | 2211002 | G-A | Homo | ||
| SBS | Chr4 | 23749764 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g39880 |
| SBS | Chr4 | 26806135 | C-T | HET | ||
| SBS | Chr4 | 32998802 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g55480 |
| SBS | Chr4 | 6633058 | G-A | Homo | ||
| SBS | Chr5 | 27733949 | G-T | HET | ||
| SBS | Chr5 | 27942624 | C-T | HET | ||
| SBS | Chr5 | 6043828 | T-C | HET | ||
| SBS | Chr6 | 27046256 | C-T | HET | ||
| SBS | Chr7 | 22395007 | C-T | HET | ||
| SBS | Chr7 | 26610970 | C-A | HET | ||
| SBS | Chr7 | 466524 | C-T | Homo | ||
| SBS | Chr8 | 12105397 | T-C | HET | ||
| SBS | Chr8 | 2629751 | A-T | HET | ||
| SBS | Chr8 | 27699212 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g44000 |
| SBS | Chr8 | 4696630 | T-G | HET | ||
| SBS | Chr9 | 10913480 | T-C | HET | ||
| SBS | Chr9 | 18165567 | A-G | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 604103 | 604104 | 1 | |
| Deletion | Chr8 | 2564990 | 2564993 | 3 | |
| Deletion | Chr11 | 4365717 | 4365732 | 15 | |
| Deletion | Chr4 | 5717937 | 5717948 | 11 | |
| Deletion | Chr7 | 9747416 | 9747439 | 23 | |
| Deletion | Chr2 | 15353955 | 15353957 | 2 | |
| Deletion | Chr5 | 17261584 | 17261585 | 1 | LOC_Os05g29820 |
| Deletion | Chr2 | 17801431 | 17801432 | 1 | |
| Deletion | Chr9 | 22150436 | 22150446 | 10 | LOC_Os09g38490 |
| Deletion | Chr11 | 23491481 | 23491482 | 1 | |
| Deletion | Chr2 | 25287257 | 25287273 | 16 | |
| Deletion | Chr3 | 29476239 | 29476248 | 9 | |
| Deletion | Chr3 | 33787006 | 33787186 | 180 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 26061634 | 26061653 | 20 | |
| Insertion | Chr1 | 5943189 | 5943209 | 21 | |
| Insertion | Chr5 | 24940514 | 24940514 | 1 | LOC_Os05g42960 |
| Insertion | Chr6 | 12551051 | 12551051 | 1 | |
| Insertion | Chr7 | 17968407 | 17968407 | 1 | LOC_Os07g30360 |
| Insertion | Chr7 | 26578145 | 26578147 | 3 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 31 | Chr1 | 1116 | |
| Translocation | Chr12 | 9135217 | Chr8 | 9992196 | LOC_Os12g16030 |
| Translocation | Chr12 | 21589417 | Chr10 | 2607871 | 2 |
| Translocation | Chr12 | 24586754 | Chr1 | 2640511 | LOC_Os12g39800 |