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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27618262	C-T	Homo
SBS	Chr1	35392927	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61130
SBS	Chr1	36298883	G-T	HET
SBS	Chr1	41016490	C-G	Homo
SBS	Chr10	16843608	G-A	HET
SBS	Chr10	1778965	G-A	HET
SBS	Chr11	15063099	A-G	HET
SBS	Chr11	9663528	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17330
SBS	Chr12	21758716	G-T	HET
SBS	Chr12	4690341	C-T	HET
SBS	Chr12	6600231	C-T	Homo
SBS	Chr12	9701390	A-G	Homo
SBS	Chr2	12167897	G-A	Homo
SBS	Chr2	26447199	G-C	HET
SBS	Chr2	35239299	G-C	HET
SBS	Chr3	2068063	T-C	HET
SBS	Chr4	1212738	G-A	Homo
SBS	Chr4	13196924	T-C	HET
SBS	Chr4	1465171	G-A	HET
SBS	Chr4	28319034	G-T	HET
SBS	Chr4	28319035	A-T	HET
SBS	Chr4	31381189	T-A	HET
SBS	Chr4	43471	C-T	Homo
SBS	Chr4	5837191	T-C	HET
SBS	Chr5	2483759	A-G	HET
SBS	Chr5	2830319	C-G	HET
SBS	Chr6	14493219	G-A	HET
SBS	Chr6	16221308	C-T	HET
SBS	Chr7	11659942	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g20200
SBS	Chr7	27108959	G-T	HET
SBS	Chr7	29325225	G-A	HET
SBS	Chr7	9745912	A-G	HET
SBS	Chr9	15171488	T-A	HET
SBS	Chr9	18711655	A-G	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1116956	1116962	6
Deletion	Chr9	2775008	2775009	1
Deletion	Chr9	5933109	5933110	1
Deletion	Chr1	6109293	6109408	115
Deletion	Chr7	9796465	9796468	3
Deletion	Chr12	24910737	24910739	2	LOC_Os12g40250
Deletion	Chr5	29017088	29017090	2

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	12592047	12592048	2
Insertion	Chr11	1897182	1897183	2
Insertion	Chr12	13935481	13935481	1
Insertion	Chr2	27576746	27576746	1
Insertion	Chr3	14163150	14163151	2
Insertion	Chr3	24787286	24787286	1
Insertion	Chr3	29762039	29762040	2
Insertion	Chr4	1543117	1543117	1
Insertion	Chr4	16140876	16140876	1
Insertion	Chr8	12578644	12578644	1
Insertion	Chr8	17963032	17963032	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	798851	816658	2
Inversion	Chr4	4057488	4089228	2
Inversion	Chr12	9862392	10307203
Inversion	Chr9	19623318	19623433	LOC_Os09g32930
Inversion	Chr8	23384602	23384712	2
Inversion	Chr11	24570588	24570706

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2005231	Chr6	23455122
Translocation	Chr12	2147144	Chr11	5073923
Translocation	Chr12	4475902	Chr3	335162
Translocation	Chr5	6061884	Chr4	16873396
Translocation	Chr8	8928502	Chr6	17497732	2
Translocation	Chr6	9741960	Chr1	23768364
Translocation	Chr12	12674029	Chr8	4812157	LOC_Os12g22450
Translocation	Chr9	12688235	Chr1	14628333
Translocation	Chr4	12889620	Chr2	23217134	2
Translocation	Chr12	14705801	Chr3	8253738
Translocation	Chr3	15421768	Chr1	14621711	2
Translocation	Chr3	15421776	Chr1	14617625	LOC_Os03g26970
Translocation	Chr8	21774755	Chr2	5969141
Translocation	Chr11	27758147	Chr4	3130966
Translocation	Chr4	32282655	Chr3	21730671	2

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