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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25391156	G-T	HET
SBS	Chr1	29587106	G-A	HET
SBS	Chr1	5034394	C-T	Homo
SBS	Chr10	13704944	G-C	Homo
SBS	Chr10	5269293	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g09740
SBS	Chr11	2270734	A-G	Homo
SBS	Chr12	10499038	C-T	HET
SBS	Chr12	13346359	A-C	HET
SBS	Chr12	23896157	G-C	Homo
SBS	Chr12	25087954	T-A	Homo	STOP_GAINED	LOC_Os12g40550
SBS	Chr2	10686214	G-T	HET
SBS	Chr2	16892158	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g28550
SBS	Chr2	18635297	C-T	HET
SBS	Chr2	18688664	G-A	HET
SBS	Chr2	20393409	C-A	HET
SBS	Chr2	21241804	A-G	Homo
SBS	Chr2	34303092	A-G	HET
SBS	Chr2	521806	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g01950
SBS	Chr3	29219760	T-A	HET
SBS	Chr4	12368913	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g21820
SBS	Chr4	12512212	T-C	HET
SBS	Chr5	20669273	C-T	HET
SBS	Chr5	24762811	T-C	Homo
SBS	Chr5	6447271	C-T	Homo
SBS	Chr6	25531392	T-A	HET
SBS	Chr6	25648097	G-A	HET
SBS	Chr6	3778433	G-C	Homo
SBS	Chr7	10081946	T-C	HET
SBS	Chr7	16212133	G-A	HET
SBS	Chr8	16223114	C-A	HET
SBS	Chr8	18860361	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30600
SBS	Chr8	24278917	T-A	Homo
SBS	Chr8	3953257	C-T	Homo
SBS	Chr9	2295629	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04320
SBS	Chr9	2992485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06360

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	988706	988709	3
Deletion	Chr10	4557986	4557988	2
Deletion	Chr5	4934156	4934161	5
Deletion	Chr10	12060281	12060283	2
Deletion	Chr11	13548904	13548905	1
Deletion	Chr5	17126252	17126254	2	LOC_Os05g29140
Deletion	Chr10	17216450	17216461	11
Deletion	Chr5	24104147	24104155	8
Deletion	Chr7	24394062	24394063	1
Deletion	Chr1	32914001	32924000	9999	LOC_Os01g56980

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21689157	21689158	2
Insertion	Chr11	17018891	17018892	2
Insertion	Chr2	30639797	30639797	1
Insertion	Chr3	18861924	18861924	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10356060	10356171
Inversion	Chr11	13505885	13506015
Inversion	Chr1	15662561	15662791
Inversion	Chr6	17188720	17188870	LOC_Os06g29820
Inversion	Chr2	18463652	18463836
Inversion	Chr6	26274475	26274589	LOC_Os06g43660
Inversion	Chr5	28311739	28368092	LOC_Os05g49370
Inversion	Chr5	28311753	28368109	LOC_Os05g49370

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3817890	Chr7	1715008
Translocation	Chr9	9765905	Chr2	6850978
Translocation	Chr3	10357770	Chr2	34582599	LOC_Os03g18454
Translocation	Chr8	12904520	Chr1	19915912
Translocation	Chr9	13081711	Chr4	13300404	2
Translocation	Chr11	13236365	Chr7	19139217
Translocation	Chr8	15300981	Chr1	12471145
Translocation	Chr11	28214730	Chr6	26628560

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