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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12667208	C-T	HET
SBS	Chr1	14438677	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25460
SBS	Chr1	14855832	A-T	Homo
SBS	Chr1	14861501	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g26224
SBS	Chr1	16591245	A-T	Homo
SBS	Chr1	41105053	A-C	HET
SBS	Chr10	15552400	C-A	HET
SBS	Chr11	18501052	G-A	Homo
SBS	Chr11	25668914	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42630
SBS	Chr2	10133408	T-C	HET
SBS	Chr3	13285614	A-G	HET
SBS	Chr3	15443565	G-A	HET
SBS	Chr3	18782565	G-A	HET
SBS	Chr3	2217477	G-C	Homo
SBS	Chr4	1808149	G-A	Homo
SBS	Chr4	18568837	C-T	HET
SBS	Chr4	21702312	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g35600
SBS	Chr4	27857077	G-A	HET
SBS	Chr4	29884868	A-G	Homo
SBS	Chr4	6809689	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12340
SBS	Chr4	7922684	T-C	HET
SBS	Chr5	16078458	T-C	HET
SBS	Chr5	27546555	C-A	HET
SBS	Chr6	12536482	G-A	Homo
SBS	Chr6	2334904	C-A	HET
SBS	Chr6	4262221	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g08560
SBS	Chr7	12870893	A-T	HET
SBS	Chr7	14938484	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g26040
SBS	Chr7	24084148	C-T	HET
SBS	Chr7	3706119	T-A	Homo
SBS	Chr8	24876565	C-T	HET
SBS	Chr8	6690983	A-G	Homo
SBS	Chr9	11587342	C-T	HET
SBS	Chr9	14427423	A-C	HET
SBS	Chr9	17959141	C-T	HET
SBS	Chr9	2153130	C-T	Homo

Deletions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2633535	2633536	1
Deletion	Chr11	5432822	5432866	44
Deletion	Chr4	12572001	12861000	288999	48

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25167381	25167383	3
Insertion	Chr10	4531275	4531277	3
Insertion	Chr11	17989059	17989059	1
Insertion	Chr12	16030037	16030055	19
Insertion	Chr6	12165190	12165190	1
Insertion	Chr6	21857776	21857777	2
Insertion	Chr8	17916534	17916534	1
Insertion	Chr9	4919476	4919476	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1473046	1473245
Inversion	Chr7	8860861	8860971
Inversion	Chr4	12572668	13052862	2
Inversion	Chr4	12861415	13052881	2
Inversion	Chr7	24384730	24563737	2
Inversion	Chr8	27734144	27734549	LOC_Os08g44050
Inversion	Chr1	34256388	34256603

Translocations: 19

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2760947	Chr6	4043112	LOC_Os08g05280
Translocation	Chr10	4574072	Chr2	33280301	2
Translocation	Chr7	6603573	Chr4	10032363
Translocation	Chr6	6689080	Chr5	6012590
Translocation	Chr10	7655025	Chr5	12229023
Translocation	Chr10	9326837	Chr4	6362444	2
Translocation	Chr10	9880542	Chr6	4103941
Translocation	Chr10	12860090	Chr2	16818187	LOC_Os10g24980
Translocation	Chr12	14219800	Chr6	16397121	LOC_Os12g24790
Translocation	Chr8	15997688	Chr7	8231075	2
Translocation	Chr4	16219584	Chr1	10199960
Translocation	Chr7	16928313	Chr4	6466726
Translocation	Chr7	17647048	Chr6	22526226
Translocation	Chr12	18848853	Chr4	4358505
Translocation	Chr12	24604001	Chr8	20252556	2
Translocation	Chr6	26890207	Chr2	29168957	2
Translocation	Chr7	27011987	Chr5	15725805
Translocation	Chr6	27392415	Chr1	378254	2
Translocation	Chr6	27392633	Chr1	378252	2

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