Search Results
| Mutant Information |
|---|
| Mutant Name | FN2561-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2561-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12050891 | G-A | HET | ||
| SBS | Chr2 | 1117023 | A-T | HET | ||
| SBS | Chr2 | 10933013 | C-A | HET | ||
| SBS | Chr2 | 20043475 | G-A | HET | ||
| SBS | Chr3 | 3790676 | T-A | Homo | ||
| SBS | Chr3 | 14736733 | C-T | Homo | ||
| SBS | Chr3 | 32249801 | G-C | Homo | ||
| SBS | Chr4 | 14626099 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g25300 |
| SBS | Chr6 | 29850 | A-G | HET | ||
| SBS | Chr7 | 6814919 | A-G | HET | ||
| SBS | Chr7 | 13072290 | G-T | HET | ||
| SBS | Chr8 | 779202 | G-A | HET | ||
| SBS | Chr8 | 16306710 | C-T | HET | ||
| SBS | Chr10 | 5091928 | C-G | |||
| SBS | Chr11 | 9695902 | A-T | HET | ||
| SBS | Chr11 | 14318408 | C-G | Homo | ||
| SBS | Chr12 | 10028419 | C-A | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 2822811 | 2822812 | 1 | |
| Deletion | Chr4 | 3350476 | 3350499 | 23 | |
| Deletion | Chr1 | 4187174 | 4187175 | 1 | |
| Deletion | Chr12 | 6685564 | 6685566 | 2 | LOC_Os12g12180 |
| Deletion | Chr8 | 8078437 | 8078438 | 1 | LOC_Os08g13590 |
| Deletion | Chr4 | 9824713 | 9824714 | 1 | LOC_Os04g17880 |
| Deletion | Chr5 | 11730001 | 11840000 | 109999 | 15 |
| Deletion | Chr5 | 12019469 | 12019470 | 1 | |
| Deletion | Chr4 | 19075167 | 19075199 | 32 | LOC_Os04g31860 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 29150317 | 29150320 | 4 | |
| Insertion | Chr1 | 34123379 | 34123379 | 1 | |
| Insertion | Chr7 | 12147185 | 12147185 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 6480740 | 6492177 | LOC_Os03g12310 |
| Inversion | Chr2 | 14659393 | 14667726 | 2 |
| Inversion | Chr8 | 17484280 | 18395176 | |
| Inversion | Chr8 | 18582099 | 19039488 | |
| Inversion | Chr3 | 25358385 | 25395437 | 2 |
| Inversion | Chr4 | 26078031 | 26078196 | |
| Inversion | Chr3 | 29127700 | 29127991 | LOC_Os03g50980 |
Translocations: 30
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1321414 | Chr4 | 27056592 | |
| Translocation | Chr10 | 1321676 | Chr8 | 10277857 | |
| Translocation | Chr10 | 1324457 | Chr8 | 11383393 | |
| Translocation | Chr4 | 2967476 | Chr1 | 23436167 | LOC_Os04g05780 |
| Translocation | Chr10 | 3151193 | Chr6 | 4985627 | |
| Translocation | Chr9 | 4699954 | Chr7 | 27254265 | |
| Translocation | Chr6 | 8458625 | Chr1 | 27473063 | |
| Translocation | Chr6 | 8620114 | Chr1 | 2937585 | 2 |
| Translocation | Chr8 | 8709089 | Chr2 | 1442230 | |
| Translocation | Chr9 | 9717457 | Chr5 | 15114226 | |
| Translocation | Chr12 | 11388030 | Chr3 | 25079482 | |
| Translocation | Chr4 | 11722607 | Chr1 | 1564669 | 2 |
| Translocation | Chr10 | 11747468 | Chr4 | 7793383 | LOC_Os10g22620 |
| Translocation | Chr9 | 11880660 | Chr1 | 24984343 | LOC_Os09g19850 |
| Translocation | Chr8 | 15226188 | Chr1 | 2638204 | |
| Translocation | Chr9 | 16540012 | Chr3 | 12661074 | |
| Translocation | Chr5 | 16694216 | Chr2 | 7523109 | |
| Translocation | Chr5 | 16961977 | Chr2 | 2674024 | |
| Translocation | Chr12 | 17802717 | Chr7 | 11613878 | LOC_Os12g29780 |
| Translocation | Chr8 | 20378130 | Chr6 | 8575539 | |
| Translocation | Chr6 | 20716647 | Chr2 | 16763258 | |
| Translocation | Chr9 | 21400560 | Chr2 | 18636883 | LOC_Os09g37110 |
| Translocation | Chr6 | 22658312 | Chr1 | 300011 | LOC_Os06g38294 |
| Translocation | Chr12 | 22721833 | Chr10 | 6570962 | |
| Translocation | Chr4 | 23013986 | Chr1 | 1924884 | |
| Translocation | Chr11 | 23980319 | Chr7 | 21096624 | |
| Translocation | Chr11 | 24719826 | Chr4 | 14890444 | LOC_Os11g41210 |
| Translocation | Chr8 | 26172815 | Chr1 | 3729705 | |
| Translocation | Chr11 | 28753002 | Chr1 | 28104454 | |
| Translocation | Chr3 | 29194440 | Chr1 | 31269094 |