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Mutant Information

Mutant Name	FN2566-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2566-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19264206	C-T	HET
SBS	Chr1	21032198	G-T	HET
SBS	Chr2	15105215	T-C	HET
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	34693287	T-C	HET
SBS	Chr4	2599541	C-A	HET
SBS	Chr4	8430593	C-T	HET
SBS	Chr5	9096123	A-G	Homo
SBS	Chr5	23480589	T-A	HET
SBS	Chr5	25270110	C-A	HET	SPLICE_SITE_DONOR	LOC_Os05g43470
SBS	Chr6	13701372	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23480
SBS	Chr7	5791486	G-A	HET
SBS	Chr10	4435187	G-A	HET
SBS	Chr10	9297233	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18294
SBS	Chr10	21187773	C-T	HET
SBS	Chr10	21187774	G-T	HET
SBS	Chr11	8991638	A-T	HET
SBS	Chr11	28812322	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47780
SBS	Chr12	3999999	A-G	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2872949	2873059	110
Deletion	Chr2	11037315	11037316	1
Deletion	Chr9	11645554	11645624	70
Deletion	Chr5	11891001	11910000	18999	2
Deletion	Chr4	14019411	14019416	5
Deletion	Chr10	20574001	21068000	493999	88
Deletion	Chr1	25888932	25888946	14
Deletion	Chr7	26828531	26828532	1
Deletion	Chr1	40107058	40107060	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	30980261	30980262	2
Insertion	Chr6	25169214	25169215	2
Insertion	Chr12	20737222	20737222	1

Inversions: 14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	101875	201012
Inversion	Chr7	101927	201018
Inversion	Chr3	2082304	2082406
Inversion	Chr2	9004925	9005223	2
Inversion	Chr12	9861907	10307315
Inversion	Chr5	11891012	12101601	2
Inversion	Chr5	11908662	12101608	2
Inversion	Chr7	17846945	17847054	LOC_Os07g30210
Inversion	Chr10	20575221	20624191	LOC_Os10g38540
Inversion	Chr10	20621461	21066185
Inversion	Chr9	21273189	21356234	2
Inversion	Chr9	21273195	21356234	2
Inversion	Chr3	34351129	34454367
Inversion	Chr3	34351134	34454378

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2594426	Chr1	17033540
Translocation	Chr8	7735570	Chr3	80591	2
Translocation	Chr12	8373857	Chr4	13263619	2
Translocation	Chr8	10009125	Chr7	8254035
Translocation	Chr7	10753608	Chr2	5400234	LOC_Os07g18154
Translocation	Chr7	10753620	Chr2	5400022	LOC_Os07g18154
Translocation	Chr10	18300817	Chr2	4169714	2
Translocation	Chr12	18687130	Chr9	6055954
Translocation	Chr11	19390832	Chr4	3614262	LOC_Os11g32820
Translocation	Chr7	19416165	Chr3	1604011
Translocation	Chr7	19555438	Chr3	15104036
Translocation	Chr11	22579179	Chr8	3761939	LOC_Os11g38070
Translocation	Chr11	28627164	Chr10	752823
Translocation	Chr11	28778538	Chr1	36478309	2