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| Mutant Information |
|---|
| Mutant Name | FN2568-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2568-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13183111 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g23470 |
| SBS | Chr1 | 32952566 | T-A | HET | ||
| SBS | Chr10 | 16998569 | A-G | HET | ||
| SBS | Chr11 | 9594860 | C-T | HET | ||
| SBS | Chr2 | 3464256 | G-A | HET | ||
| SBS | Chr2 | 35734030 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g58430 |
| SBS | Chr3 | 14649147 | C-G | HET | ||
| SBS | Chr3 | 14666044 | T-A | HET | ||
| SBS | Chr3 | 21771471 | C-T | Homo | ||
| SBS | Chr3 | 24825660 | A-G | Homo | ||
| SBS | Chr3 | 35814272 | T-C | HET | ||
| SBS | Chr3 | 36204771 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g64070 |
| SBS | Chr4 | 20182424 | G-A | Homo | ||
| SBS | Chr4 | 25231167 | A-G | Homo | ||
| SBS | Chr4 | 31020673 | A-T | Homo | ||
| SBS | Chr4 | 4636025 | G-T | Homo | ||
| SBS | Chr4 | 4636027 | A-T | Homo | ||
| SBS | Chr5 | 10485624 | C-T | HET | ||
| SBS | Chr7 | 26713345 | C-G | HET | ||
| SBS | Chr8 | 21997604 | G-C | Homo | ||
| SBS | Chr8 | 3287029 | A-G | HET | ||
| SBS | Chr9 | 14633705 | C-T | HET | ||
| SBS | Chr9 | 2246392 | C-T | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 194174 | 194186 | 12 | |
| Deletion | Chr6 | 202505 | 202508 | 3 | LOC_Os06g01320 |
| Deletion | Chr3 | 2294700 | 2294702 | 2 | |
| Deletion | Chr4 | 7400726 | 7400727 | 1 | LOC_Os04g13320 |
| Deletion | Chr2 | 10739981 | 10739982 | 1 | |
| Deletion | Chr4 | 11414200 | 11414206 | 6 | |
| Deletion | Chr3 | 29366743 | 29366744 | 1 | |
| Deletion | Chr2 | 30388868 | 30388875 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 8851721 | 8851721 | 1 | |
| Insertion | Chr4 | 7871545 | 7871552 | 8 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 13052908 | 13053153 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4911780 | Chr7 | 25127319 | |
| Translocation | Chr9 | 7837398 | Chr4 | 18954423 | |
| Translocation | Chr12 | 8376265 | Chr3 | 25764651 | LOC_Os12g14650 |
| Translocation | Chr5 | 9430574 | Chr1 | 40606660 | |
| Translocation | Chr11 | 12810740 | Chr5 | 8349921 | |
| Translocation | Chr7 | 16764692 | Chr5 | 16669375 | 2 |
| Translocation | Chr7 | 23842095 | Chr1 | 3093695 | |
| Translocation | Chr4 | 25205774 | Chr3 | 16530826 | |
| Translocation | Chr4 | 32065675 | Chr3 | 35082623 | LOC_Os04g53810 |