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Mutant Information

Mutant Name	FN2572-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2572-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 114

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10353457	A-G	HET	INTERGENIC
SBS	Chr1	11911810	T-C	HET	INTERGENIC
SBS	Chr1	13000231	G-A	HET
SBS	Chr1	15748113	C-T	Homo
SBS	Chr1	20438343	C-T	HET
SBS	Chr1	21716978	T-C	HET
SBS	Chr1	28892527	T-C	HOMO	INTERGENIC
SBS	Chr1	35960102	A-G	HET
SBS	Chr1	35960102	A-G	HET	INTERGENIC
SBS	Chr1	37303883	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64250
SBS	Chr1	39061965	A-T	HOMO	INTERGENIC
SBS	Chr1	42725701	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g73760
SBS	Chr1	42761246	A-G	HET
SBS	Chr1	5995170	C-T	Homo
SBS	Chr1	5995170	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	620805	C-T	HOMO	UTR_3_PRIME
SBS	Chr1	676117	G-T	HOMO	INTERGENIC
SBS	Chr10	10738902	A-T	HET
SBS	Chr10	10738902	A-T	HET	INTERGENIC
SBS	Chr10	10739128	C-T	HET
SBS	Chr10	10739128	C-T	HET	INTERGENIC
SBS	Chr10	137396	G-C	HET
SBS	Chr10	14755863	A-C	HET
SBS	Chr10	17351029	C-G	HOMO	INTERGENIC
SBS	Chr10	17399066	G-A	HET
SBS	Chr10	17399066	G-A	HOMO	INTERGENIC
SBS	Chr10	19358309	A-C	HET
SBS	Chr10	19358309	A-C	HOMO	SPLICE_SITE_REGION
SBS	Chr10	3747862	A-G	HET	INTERGENIC
SBS	Chr10	6190529	G-A	HET
SBS	Chr10	6871509	C-A	HET
SBS	Chr10	6871509	C-A	HET	INTRON
SBS	Chr10	7379797	G-A	HET	STOP_GAINED	LOC_Os10g13610
SBS	Chr10	7553183	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13900
SBS	Chr10	9844900	C-G	HET
SBS	Chr11	26451252	G-A	HET
SBS	Chr11	574224	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g02110
SBS	Chr11	9316026	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g16790
SBS	Chr12	10592411	T-G	HET
SBS	Chr12	21866797	G-C	HET	INTERGENIC
SBS	Chr2	14223292	C-A	HET
SBS	Chr2	14223292	C-A	HOMO	INTERGENIC
SBS	Chr2	17756497	A-G	HOMO	INTERGENIC
SBS	Chr2	17994326	A-G	HET
SBS	Chr2	27004765	C-T	HET	INTERGENIC
SBS	Chr2	29461066	C-T	HET
SBS	Chr2	30937608	A-G	HET
SBS	Chr2	30937608	A-G	HET	INTERGENIC
SBS	Chr2	31964091	T-G	HET
SBS	Chr2	33114092	A-T	HET
SBS	Chr2	33114092	A-T	HET	INTERGENIC
SBS	Chr2	7756276	C-T	HET
SBS	Chr3	10144767	T-A	HOMO	INTERGENIC
SBS	Chr3	15816794	G-A	HET
SBS	Chr3	20448565	C-A	HET
SBS	Chr3	26935301	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	33854442	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g59480
SBS	Chr3	35875684	G-A	HET
SBS	Chr3	8437723	A-C	Homo
SBS	Chr4	12714507	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g22460
SBS	Chr4	18451218	G-A	HET	STOP_GAINED	LOC_Os04g30870
SBS	Chr4	21186906	G-C	HET	INTERGENIC
SBS	Chr4	24221480	G-T	HOMO	INTERGENIC
SBS	Chr4	31631914	T-C	HET
SBS	Chr4	864734	C-A	HET
SBS	Chr5	12162741	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20730
SBS	Chr5	14472026	A-C	HET
SBS	Chr5	17506147	G-T	HET
SBS	Chr5	17506147	G-T	HOMO	INTERGENIC
SBS	Chr5	18583619	G-A	HET
SBS	Chr5	18583619	G-A	HET	INTERGENIC
SBS	Chr5	24626346	T-A	HET
SBS	Chr5	24626346	T-A	HOMO	UTR_3_PRIME
SBS	Chr5	24827694	C-A	HET	INTERGENIC
SBS	Chr5	26585827	A-G	HET
SBS	Chr5	27872646	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g48620
SBS	Chr5	2797305	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g05620
SBS	Chr5	7857729	T-G	HET
SBS	Chr5	7857732	T-G	HET
SBS	Chr5	7930264	T-C	HET
SBS	Chr6	10398457	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g17910
SBS	Chr6	10398457	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g17910
SBS	Chr6	10604829	C-T	Homo
SBS	Chr6	10604829	C-T	HOMO	INTERGENIC
SBS	Chr6	17423049	T-C	Homo
SBS	Chr6	17423049	T-C	HOMO	INTRON
SBS	Chr6	25170058	A-T	HOMO	INTERGENIC
SBS	Chr6	5324569	C-T	HET
SBS	Chr7	12520786	C-A	HET
SBS	Chr7	13968602	C-T	Homo
SBS	Chr7	13968602	C-T	HOMO	INTERGENIC
SBS	Chr7	19779761	G-A	HET
SBS	Chr7	1981646	C-G	HET
SBS	Chr7	5291268	G-A	HET	INTERGENIC
SBS	Chr7	8902460	C-G	Homo
SBS	Chr7	8902460	C-G	HOMO	INTERGENIC
SBS	Chr7	9825007	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g16750
SBS	Chr7	9825007	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g16750
SBS	Chr8	21715424	C-T	HET	INTERGENIC
SBS	Chr8	5087161	A-T	HET	STOP_GAINED	LOC_Os08g08770
SBS	Chr8	9136073	G-A	HET	INTRON
SBS	Chr9	13351373	C-T	HET
SBS	Chr9	13351373	C-T	HOMO	INTERGENIC
SBS	Chr9	1926886	C-A	HET
SBS	Chr9	1926886	C-A	HOMO	INTRON
SBS	Chr9	1926892	C-A	HET
SBS	Chr9	1926892	C-A	HOMO	INTRON
SBS	Chr9	42844	C-T	HET
SBS	Chr9	42844	C-T	HET	INTERGENIC
SBS	Chr9	4886230	A-G	HET
SBS	Chr9	4886230	A-G	HOMO	INTRON
SBS	Chr9	4916966	T-C	HET
SBS	Chr9	6361628	A-C	HET
SBS	Chr9	91617	C-T	HET

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	471309	471310	1
Deletion	Chr11	919717	919723	6
Deletion	Chr7	930233	930242	9
Deletion	Chr1	980518	980519	1	2
Deletion	Chr1	2043608	2043624	16
Deletion	Chr3	2582878	2582889	11
Deletion	Chr7	2906819	2906828	9
Deletion	Chr11	4470515	4470544	29
Deletion	Chr5	5636798	5636809	11
Deletion	Chr10	6634001	6748000	114000	13
Deletion	Chr7	6863455	6863456	1
Deletion	Chr2	8362925	8362938	13	2
Deletion	Chr2	9101886	9101887	1
Deletion	Chr4	9225927	9225928	1	2
Deletion	Chr10	10576030	10576031	1	2
Deletion	Chr2	10842249	10842259	10
Deletion	Chr8	10884010	10884012	2
Deletion	Chr6	11342266	11342281	15	2
Deletion	Chr10	11558704	11558705	1
Deletion	Chr6	13503678	13503684	6	2
Deletion	Chr5	13604661	13604662	1	2
Deletion	Chr2	14215609	14215618	9	2
Deletion	Chr9	14423230	14423231	1
Deletion	Chr12	15522374	15522378	4	2
Deletion	Chr1	16126001	16234000	108000	19
Deletion	Chr2	16840196	16840204	8	2
Deletion	Chr9	17809574	17816333	6759	2
Deletion	Chr8	19820254	19820258	4	2
Deletion	Chr7	20781157	20781158	1
Deletion	Chr10	21562496	21562506	10	LOC_Os10g40250
Deletion	Chr12	22604673	22604677	4	LOC_Os12g36890
Deletion	Chr5	28446005	28446015	10
Deletion	Chr5	28882749	28882750	1
Deletion	Chr6	29657847	29657848	1
Deletion	Chr1	30941777	30941783	6
Deletion	Chr4	31223224	31223229	5	2
Deletion	Chr4	31274043	31274078	35	2
Deletion	Chr3	35189102	35189112	10
Deletion	Chr1	35654761	35654779	18	2
Deletion	Chr1	36122574	36122588	14	2
Deletion	Chr1	38813289	38813290	1

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15970530	15970530	1	LOC_Os01g28530
Insertion	Chr1	39804019	39804020	2
Insertion	Chr10	817630	817630	1
Insertion	Chr12	12896716	12896716	1
Insertion	Chr12	24095494	24095495	2
Insertion	Chr2	12801310	12801310	1
Insertion	Chr2	21300284	21300284	1
Insertion	Chr3	12850614	12850614	1
Insertion	Chr5	15251210	15251210	1	2
Insertion	Chr5	15251210	15251210	1	2
Insertion	Chr5	22050941	22050941	1
Insertion	Chr5	25846306	25846307	2	2
Insertion	Chr5	25846306	25846307	2	2
Insertion	Chr5	6179376	6179377	2	2
Insertion	Chr5	6179376	6179377	2	2
Insertion	Chr5	9132863	9132863	1
Insertion	Chr7	15924046	15924046	1
Insertion	Chr7	19981738	19981738	1
Insertion	Chr8	19903555	19903555	1

Inversions: 28

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1192167	1192305	LOC_Os02g03030
Inversion	Chr3	1775160	1775665	LOC_Os03g03890
Inversion	Chr8	4584529	4584727
Inversion	Chr7	5134366	5134578	LOC_Os07g09675
Inversion	Chr5	5363934	5364086
Inversion	Chr11	5427562	5438438
Inversion	Chr7	5866428	5866539
Inversion	Chr3	6343966	6344168
Inversion	Chr10	6633601	6910090
Inversion	Chr10	6748020	6910111
Inversion	Chr10	6748021	6910112
Inversion	Chr3	15441861	15442058
Inversion	Chr5	18318922	18319066
Inversion	Chr7	19348114	19348353
Inversion	Chr11	19628838	19628951	LOC_Os11g33170
Inversion	Chr8	19895897	19896080
Inversion	Chr12	20817617	20817820	LOC_Os12g34350
Inversion	Chr4	21065866	21066137
Inversion	Chr1	21586694	21714906	2
Inversion	Chr1	21586705	21714910	2
Inversion	Chr11	21611444	21611553	LOC_Os11g36620
Inversion	Chr6	23097536	23097664
Inversion	Chr1	25070400	25070511
Inversion	Chr7	28835958	28836181
Inversion	Chr5	29071381	29071489	LOC_Os05g50720
Inversion	Chr4	29735556	29735785
Inversion	Chr1	33668222	33668426	LOC_Os01g58240
Inversion	Chr1	39718336	39718675

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17809574	Chr7	25215217	2
Translocation	Chr9	17809576	Chr7	25215217	2
Translocation	Chr9	17816328	Chr7	25215209	2
Translocation	Chr12	18508134	Chr2	12962842
Translocation	Chr7	21347695	Chr1	16125670
Translocation	Chr7	21349906	Chr1	16234001	LOC_Os01g28989
Translocation	Chr3	34394716	Chr2	31696450	2

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