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Mutant Information |
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Mutant Name | FN2573-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2573-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 37
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1090685 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g02940 |
SBS | Chr1 | 4483503 | C-T | HET | ||
SBS | Chr1 | 15249498 | A-T | HET | ||
SBS | Chr1 | 24027694 | A-T | Homo | ||
SBS | Chr1 | 33490570 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g57930 |
SBS | Chr1 | 34833009 | G-A | HET | ||
SBS | Chr2 | 1221744 | G-A | HET | ||
SBS | Chr2 | 1221753 | G-A | HET | ||
SBS | Chr2 | 1669639 | A-C | HET | ||
SBS | Chr2 | 1920820 | C-T | HET | ||
SBS | Chr2 | 9803643 | C-T | HET | ||
SBS | Chr2 | 21768890 | C-T | Homo | ||
SBS | Chr2 | 22100720 | G-C | HET | ||
SBS | Chr2 | 31782781 | G-C | Homo | ||
SBS | Chr2 | 35461568 | G-A | HET | ||
SBS | Chr3 | 1983397 | A-G | HET | ||
SBS | Chr3 | 10509918 | C-T | HET | ||
SBS | Chr3 | 24983006 | C-G | HET | ||
SBS | Chr3 | 29420854 | G-T | Homo | ||
SBS | Chr3 | 32720589 | G-A | HET | SPLICE_SITE_ACCEPTOR | LOC_Os03g57370 |
SBS | Chr4 | 13485835 | G-T | HET | ||
SBS | Chr4 | 16715327 | C-G | HET | ||
SBS | Chr4 | 27744879 | T-C | HET | ||
SBS | Chr4 | 30177252 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g50980 |
SBS | Chr4 | 32472185 | G-T | HET | ||
SBS | Chr4 | 32472186 | C-T | HET | ||
SBS | Chr5 | 11142713 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g19200 |
SBS | Chr5 | 24959191 | A-T | HET | ||
SBS | Chr5 | 24959192 | A-T | HET | ||
SBS | Chr6 | 7411453 | C-T | Homo | ||
SBS | Chr6 | 20342837 | C-T | HET | ||
SBS | Chr8 | 23514914 | T-A | HET | ||
SBS | Chr8 | 27759640 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g44080 |
SBS | Chr9 | 1690320 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g03420 |
SBS | Chr9 | 2160436 | C-T | HET | ||
SBS | Chr12 | 3446158 | G-T | HET | ||
SBS | Chr12 | 12521516 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g22210 |
Deletions: 9
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 13935849 | 13935883 | 34 | |
Deletion | Chr4 | 18073946 | 18073952 | 6 | |
Deletion | Chr2 | 19320001 | 19361000 | 40999 | 7 |
Deletion | Chr5 | 21481055 | 21481059 | 4 | LOC_Os05g36230 |
Deletion | Chr3 | 23452657 | 23452659 | 2 | |
Deletion | Chr11 | 24330661 | 24330667 | 6 | |
Deletion | Chr6 | 26740118 | 26740120 | 2 | LOC_Os06g44300 |
Deletion | Chr1 | 30126646 | 30126647 | 1 | LOC_Os01g52430 |
Deletion | Chr3 | 34319632 | 34319636 | 4 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr3 | 13380250 | 13380250 | 1 | |
Insertion | Chr8 | 6088575 | 6088637 | 63 | |
Insertion | Chr10 | 21002192 | 21002192 | 1 | |
Insertion | Chr11 | 25087720 | 25087720 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 1283264 | 1283594 | 2 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 16926020 | Chr4 | 916298 | 2 |
Translocation | Chr8 | 17921490 | Chr5 | 12103301 | 2 |
Translocation | Chr5 | 22184405 | Chr2 | 30196158 | LOC_Os05g37880 |
Translocation | Chr5 | 22184414 | Chr2 | 30201849 | LOC_Os05g37880 |