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Mutant Information

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10520045	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18670
SBS	Chr1	34055245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	34055246	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr10	19546145	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g36530
SBS	Chr10	21339204	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39890
SBS	Chr10	4342715	C-G	Homo
SBS	Chr11	3680537	A-G	HET
SBS	Chr12	11157391	C-T	Homo
SBS	Chr12	22593890	T-C	HET
SBS	Chr12	26336025	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42370
SBS	Chr12	26463238	T-C	HET
SBS	Chr2	19063024	T-G	HET
SBS	Chr3	1532732	C-T	HET
SBS	Chr3	16785655	C-G	Homo
SBS	Chr3	20128970	G-A	Homo	STOP_GAINED	LOC_Os03g36290
SBS	Chr3	24973245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44390
SBS	Chr3	25532883	G-A	Homo
SBS	Chr3	637134	C-T	HET
SBS	Chr3	9974186	C-G	Homo
SBS	Chr4	31431238	C-T	HET
SBS	Chr4	34233484	G-C	HET
SBS	Chr4	8167326	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14570
SBS	Chr4	9612349	G-A	HET
SBS	Chr5	13368214	A-G	HET
SBS	Chr5	28295344	G-A	HET
SBS	Chr5	29773576	G-A	HET
SBS	Chr5	5120723	T-A	HET
SBS	Chr5	9805000	A-T	HET
SBS	Chr6	17051996	C-T	Homo
SBS	Chr6	20044181	G-A	HET
SBS	Chr6	6945200	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g12720
SBS	Chr6	7730052	G-A	HET
SBS	Chr7	17464010	A-T	HET
SBS	Chr7	29451591	T-A	HET
SBS	Chr7	630469	C-A	HET
SBS	Chr7	6476918	G-A	Homo
SBS	Chr7	6476919	G-A	Homo
SBS	Chr8	3631743	T-C	HET
SBS	Chr8	6558540	T-C	HET
SBS	Chr8	9836022	G-A	HET
SBS	Chr9	10074488	C-T	Homo
SBS	Chr9	18472137	C-T	HET
SBS	Chr9	18472138	A-T	HET
SBS	Chr9	22528144	G-C	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	26047	26055	8
Deletion	Chr4	5802864	5802866	2
Deletion	Chr8	6968244	6968259	15	LOC_Os08g11890
Deletion	Chr3	7021194	7021200	6
Deletion	Chr3	7038059	7038061	2
Deletion	Chr6	10102297	10102309	12	LOC_Os06g17410
Deletion	Chr9	11886008	11886010	2
Deletion	Chr1	17463095	17463096	1
Deletion	Chr6	19329544	19329550	6
Deletion	Chr3	19564324	19564479	155
Deletion	Chr1	19869612	19869617	5
Deletion	Chr5	20533352	20533370	18
Deletion	Chr10	23058071	23058072	1
Deletion	Chr8	23556258	23556266	8	LOC_Os08g37260
Deletion	Chr5	24051726	24051730	4	LOC_Os05g41040
Deletion	Chr12	24768586	24768587	1	LOC_Os12g40060
Deletion	Chr2	30147265	30147268	3
Deletion	Chr1	41761194	41761207	13

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	4396816	4396817	2

Inversions: 16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2517806	2518069	LOC_Os02g05244
Inversion	Chr4	5334643	5334922
Inversion	Chr7	7481537	7481642
Inversion	Chr6	7916271	7916391	LOC_Os06g14180
Inversion	Chr4	8778503	8778723
Inversion	Chr12	15568866	15568986
Inversion	Chr7	15822493	15965744	LOC_Os07g27230
Inversion	Chr7	15822498	15965744	LOC_Os07g27230
Inversion	Chr11	15939235	15939478	LOC_Os11g27700
Inversion	Chr1	17607763	18163258	2
Inversion	Chr1	17607774	18163258	2
Inversion	Chr8	18294465	18294584	LOC_Os08g29760
Inversion	Chr1	22978572	22978952
Inversion	Chr2	23530438	23530545
Inversion	Chr5	23907016	23907317
Inversion	Chr7	26805901	26806056	LOC_Os07g44930

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6190465	Chr3	27458659	2
Translocation	Chr4	9441843	Chr1	38446244	2
Translocation	Chr4	9442257	Chr1	38446247	2
Translocation	Chr11	14213819	Chr6	15837266	2
Translocation	Chr9	22697266	Chr4	13654268	2
Translocation	Chr9	22697287	Chr4	13654191	2
Translocation	Chr11	27777504	Chr4	9441837

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