Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13916769	G-C	Homo
SBS	Chr1	28312977	G-T	HET
SBS	Chr1	33779982	G-T	Homo
SBS	Chr1	36877289	A-T	HET
SBS	Chr1	6498262	C-T	Homo
SBS	Chr1	6726360	T-C	Homo
SBS	Chr10	12427593	A-G	HET
SBS	Chr10	871982	C-T	HET
SBS	Chr11	22890451	A-T	Homo
SBS	Chr11	28447064	C-T	HET
SBS	Chr2	27088884	G-A	Homo
SBS	Chr2	5603206	C-G	HET
SBS	Chr3	13265203	C-T	HET
SBS	Chr3	13587588	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23950
SBS	Chr3	19407891	C-T	HET
SBS	Chr4	19528953	A-G	HET
SBS	Chr5	19836251	A-T	Homo
SBS	Chr6	19882063	C-A	HET
SBS	Chr6	20290371	A-G	HET
SBS	Chr7	19573643	C-T	HET
SBS	Chr7	7853027	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr8	11608632	T-C	HET
SBS	Chr8	21849602	T-C	Homo
SBS	Chr8	959246	T-G	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2271511	2271512	1
Deletion	Chr9	2440769	2440771	2
Deletion	Chr5	6349252	6349255	3	LOC_Os05g11250
Deletion	Chr6	6886237	6886241	4
Deletion	Chr8	7100576	7100587	11
Deletion	Chr10	10652516	10652838	322
Deletion	Chr1	13831646	13831650	4
Deletion	Chr7	16387211	16387212	1
Deletion	Chr10	16907001	17050000	142999	22
Deletion	Chr5	17974514	17974515	1
Deletion	Chr3	23116619	23116620	1
Deletion	Chr1	33623050	33623052	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	15983382	15983459	78
Insertion	Chr10	22796758	22796791	34
Insertion	Chr11	19416072	19416072	1
Insertion	Chr12	18133235	18133236	2
Insertion	Chr2	15267660	15267661	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10534251	10685114	LOC_Os06g18090
Inversion	Chr6	10534255	10755606	LOC_Os06g18090
Inversion	Chr1	40670047	40670154	LOC_Os01g70240

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5409763	Chr4	24773623
Translocation	Chr4	7547502	Chr1	2551145	2
Translocation	Chr5	9090908	Chr2	15277480	2
Translocation	Chr10	11116548	Chr9	1609908
Translocation	Chr11	13710946	Chr2	13608085
Translocation	Chr12	18301853	Chr9	21567476	LOC_Os12g30490
Translocation	Chr5	20367059	Chr3	16526020	2
Translocation	Chr10	21106534	Chr4	14888754	LOC_Os10g39510
Translocation	Chr11	22180241	Chr5	16082507
Translocation	Chr6	28538074	Chr3	15949967

Main menu