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| Mutant Information |
|---|
| Mutant Name | FN2580-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2580-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12513187 | G-A | Homo | ||
| SBS | Chr1 | 21428496 | C-G | Homo | ||
| SBS | Chr1 | 24873329 | A-G | HET | ||
| SBS | Chr1 | 34642810 | G-A | HET | ||
| SBS | Chr1 | 34642811 | G-A | HET | ||
| SBS | Chr1 | 39049527 | A-G | HET | ||
| SBS | Chr10 | 10744056 | A-C | Homo | ||
| SBS | Chr10 | 12436242 | T-C | Homo | ||
| SBS | Chr10 | 14982787 | G-T | HET | ||
| SBS | Chr10 | 21843174 | G-C | Homo | ||
| SBS | Chr10 | 478838 | A-T | Homo | ||
| SBS | Chr10 | 478840 | A-G | Homo | ||
| SBS | Chr10 | 5897183 | A-T | Homo | ||
| SBS | Chr11 | 2238138 | C-T | Homo | ||
| SBS | Chr11 | 23553997 | A-C | HET | ||
| SBS | Chr12 | 9441875 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g16490 |
| SBS | Chr2 | 17355468 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g29230 |
| SBS | Chr2 | 21310078 | T-C | Homo | ||
| SBS | Chr2 | 2357517 | C-T | HET | ||
| SBS | Chr2 | 27309900 | T-A | HET | ||
| SBS | Chr2 | 33289472 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g54280 |
| SBS | Chr3 | 16976015 | T-C | HET | ||
| SBS | Chr3 | 19871066 | T-A | Homo | ||
| SBS | Chr3 | 20083292 | G-T | HET | ||
| SBS | Chr3 | 24608792 | C-T | HET | ||
| SBS | Chr4 | 10637028 | G-A | HET | ||
| SBS | Chr4 | 1746972 | T-C | HET | ||
| SBS | Chr4 | 6789834 | G-A | HET | ||
| SBS | Chr5 | 10216598 | G-A | HET | ||
| SBS | Chr5 | 2257940 | C-T | HET | ||
| SBS | Chr6 | 27992989 | G-A | HET | ||
| SBS | Chr6 | 4757629 | C-A | HET | ||
| SBS | Chr6 | 9593225 | C-G | HET | ||
| SBS | Chr9 | 14311247 | T-A | HET | ||
| SBS | Chr9 | 14650829 | C-A | HET | ||
| SBS | Chr9 | 8352722 | T-A | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 3020153 | 3020154 | 1 | LOC_Os09g06410 |
| Deletion | Chr8 | 3118394 | 3118399 | 5 | |
| Deletion | Chr3 | 3898843 | 3898845 | 2 | |
| Deletion | Chr2 | 4703819 | 4703820 | 1 | |
| Deletion | Chr4 | 5459349 | 5459352 | 3 | |
| Deletion | Chr6 | 6381375 | 6381396 | 21 | |
| Deletion | Chr12 | 10352395 | 10352402 | 7 | |
| Deletion | Chr10 | 11004583 | 11004584 | 1 | |
| Deletion | Chr6 | 18092641 | 18092642 | 1 | |
| Deletion | Chr5 | 20839914 | 20839915 | 1 | LOC_Os05g35100 |
| Deletion | Chr4 | 23153216 | 23153221 | 5 | |
| Deletion | Chr6 | 23785461 | 23785466 | 5 | |
| Deletion | Chr8 | 24723455 | 24723457 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 24199989 | 24199990 | 2 | |
| Insertion | Chr9 | 13045718 | 13045719 | 2 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 6463156 | 6908889 | 2 |
| Inversion | Chr10 | 13894123 | 14138928 | |
| Inversion | Chr10 | 13928381 | 14138927 | |
| Inversion | Chr8 | 18499004 | 18508016 | |
| Inversion | Chr8 | 18499008 | 18508016 | |
| Inversion | Chr9 | 21532763 | 21533018 | |
| Inversion | Chr5 | 28542711 | 28543031 | LOC_Os05g49750 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5417227 | Chr3 | 1269642 | |
| Translocation | Chr10 | 13894135 | Chr4 | 6908894 | 2 |
| Translocation | Chr5 | 27408704 | Chr4 | 28035486 |