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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6721491	T-C	Homo
SBS	Chr1	9542067	T-G	HET
SBS	Chr1	14774591	C-T	HET
SBS	Chr1	19838940	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35820
SBS	Chr1	19838949	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35820
SBS	Chr1	19838951	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35820
SBS	Chr1	28041950	C-T	Homo
SBS	Chr1	36994761	C-A	HET
SBS	Chr1	40620710	A-T	HET
SBS	Chr2	692052	G-A	HET
SBS	Chr2	2572159	G-T	HET
SBS	Chr2	15208597	A-T	HET
SBS	Chr2	15496688	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26390
SBS	Chr3	33897331	A-C	HET
SBS	Chr4	2454542	C-G	HET
SBS	Chr4	4473459	G-A	HET
SBS	Chr4	6018348	G-T	HET
SBS	Chr4	9749771	C-T	HET
SBS	Chr4	10188365	G-A	HET
SBS	Chr4	13532525	A-C	Homo
SBS	Chr4	17182367	G-C	Homo
SBS	Chr4	32148024	C-T	Homo
SBS	Chr5	25911848	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44540
SBS	Chr6	7190005	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g13100
SBS	Chr6	14954267	G-C	Homo
SBS	Chr6	17048346	G-A	HET
SBS	Chr7	16372124	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28070
SBS	Chr7	25447579	C-G	HET
SBS	Chr7	29457143	C-G	HET
SBS	Chr9	8276673	A-T	HET
SBS	Chr11	4150774	G-T	HET
SBS	Chr11	4827839	C-T	HET
SBS	Chr12	5239669	G-C	HET
SBS	Chr12	8798636	C-T	HET
SBS	Chr12	20982105	C-T	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	719001	943000	223999	37
Deletion	Chr8	1697740	1697743	3
Deletion	Chr4	3421525	3421527	2
Deletion	Chr10	4665998	4666000	2
Deletion	Chr7	4887152	4887154	2	LOC_Os07g09320
Deletion	Chr5	9709001	10000000	290999	41
Deletion	Chr5	10027001	10042000	14999	2
Deletion	Chr5	10061001	10179000	117999	14
Deletion	Chr5	10204001	10267000	62999	11
Deletion	Chr5	10750001	10856000	105999	12
Deletion	Chr8	11209419	11210414	995	LOC_Os08g18780
Deletion	Chr8	17577001	17624000	46999	9
Deletion	Chr3	21830078	21830091	13
Deletion	Chr9	22493141	22493142	1
Deletion	Chr2	25307897	25307983	86
Deletion	Chr8	25977284	25977290	6	LOC_Os08g41100

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23047852	23047853	2
Insertion	Chr1	31479258	31479259	2
Insertion	Chr4	4021831	4021831	1
Insertion	Chr11	12069859	12069859	1
Insertion	Chr12	1227018	1227018	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3303363	3308492	2
Inversion	Chr8	3303371	3308507	2
Inversion	Chr12	10384649	10472491	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4726834	Chr5	21043972
Translocation	Chr12	4731054	Chr5	21043963
Translocation	Chr5	4954663	Chr1	19235228
Translocation	Chr9	9357599	Chr6	29946116	2
Translocation	Chr12	12295212	Chr4	14224718
Translocation	Chr3	24883120	Chr2	8852185
Translocation	Chr11	24894495	Chr5	15914212

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